Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq43099 145 8e-30 seq200956 102 9e-17 >seq43099 Length=3685 Score = 145 bits (160), Expect = 8e-30 Identities = 221/312 (71%), Gaps = 2/312 (1%) Strand=Plus/Minus Query 153040 GAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTT 153099 || || ||||| ||||| | ||||||||||| | ||| | || ||| | ||| |||| Sbjct 2247 GAAACTTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTT 2188 Query 153100 AGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACC 153159 ||||||| | ||| | ||||||||| || | || ||||| | | | | |||| Sbjct 2187 TCCAATAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATG 2128 Query 153160 TCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAA 153219 | || ||||| | ||||||| ||||| || | |||| || | || || || ||| Sbjct 2127 AGTGCTCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAA 2068 Query 153220 GAAATC-AGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTT 153278 |||||| | | || ||||||||||||||||||| ||||| || || ||||| || || Sbjct 2067 GAAATCCATGTAGTG-GAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTT 2009 Query 153279 GAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACCTCATGAGAACTTCGTGTT 153338 || |||||| ||| | ||||| ||||| | || || ||| |||| ||| | | || Sbjct 2008 AAATGAAGGTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATT 1949 Query 153339 CCCTGAAGAGGT 153350 | |||| ||||| Sbjct 1948 CTCTGAGGAGGT 1937 >seq200956 Length=1523 Score = 102 bits (112), Expect = 9e-17 Identities = 178/258 (69%), Gaps = 7/258 (3%) Strand=Plus/Plus Query 153043 ACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGC 153102 || ||||| ||||||| ||| ||| | || || || ||||| ||| |||| | Sbjct 14 ACTTATTCAATGGTTATCAATAATTATTTTTTGTATCACATCTTTGGGGTTGATTTTTCC 73 Query 153103 AATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTT--GGACCT 153160 ||||||| | | | ||||||||||| | ||| || | || | | ||| ||| Sbjct 74 AATAAACATTAGTTACATTTCTTTATATTATTTATAGGAATAATCGATTTTTATGGATAA 133 Query 153161 CTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAG 153220 | || ||||| || || | ||||| ||| | ||||||| || ||||| | ||| Sbjct 134 GTGCTCTTGGAGCAATCTGTTTGGCTCTGAATTTATGTGCTTATGACTTTGTTTTCTAAG 193 Query 153221 AAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGA 153280 |||| | | |||||| |||||||||||| |||||||| || ||||| ||||| | Sbjct 194 AAATTTGTGA-----AAGATCATGAATTTGAGACTTTCTATACAAAAAATATTCTTTTAA 248 Query 153281 ACGAAGGTCTTCGTGCTT 153298 |||||||| || ||| || Sbjct 249 ACGAAGGTATTTGTGTTT 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548176590795680