Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq173968 170 2e-36 seq203223 96.9 4e-14 seq82795 93.3 5e-13 seq87083 87.8 2e-11 >seq173968 Length=7941 Score = 170 bits (188), Expect = 2e-36 Identities = 203/273 (74%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || ||||| ||||| || || || ||||| | |||| || || ||| Sbjct 7941 GAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGCGACCTGG 7882 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| ||||| ||||| ||| ||||| ||||| |||||||| Sbjct 7881 ACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAGCGGCGAAG 7822 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||| || |||| ||||| ||||||| | |||| |||| | |||| Sbjct 7821 AAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGGTTTTCCCA-TTGACG 7763 Query 869813 GT-GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | ||| |||||| || |||||||||||||| | ||| ||||||||||| ||||| Sbjct 7762 CTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCTCGGCCTTCTTGTA 7703 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||| ||||| |||| |||| | || ||||| Sbjct 7702 CATTTCCCAGACTTCAGGGTACTGAATCGGGAA 7670 >seq203223 Length=1923 Score = 96.9 bits (106), Expect = 4e-14 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || |||||||| ||||| ||||| ||||| || || | |||||| || || ||||| ||| Sbjct 264 CCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAG 205 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 ||||| || ||| ||| || ||| || || ||||||||||| ||| ||| | Sbjct 204 ATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCC------G 151 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| | ||||| | ||| || ||| ||| | || | || ||||| ||| Sbjct 150 TCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGCG 91 Query 869399 CGAAAGAG 869406 ||||||| Sbjct 90 TGAAAGAG 83 Score = 87.8 bits (96), Expect = 2e-11 Identities = 169/248 (68%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || | | |||||| ||||||||||| |||| | ||||| Sbjct 618 GCCTTCTGGTACTCCCCAACCCTCTTCTCGAAGAAGTTGGTCTTTCCCTGCAAAGAGATT 559 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | |||||||| |||||| || | ||||| ||| || | || | | || Sbjct 558 AGTTCCATCCAGTCGAACGGATTCGAAACGTTGTACATCTTCCCGTAACCCAAGGCGCCG 499 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||||||| ||||| || || |||||||| |||| ||| || | |||||| || | Sbjct 498 AGCAGGCGATCGGCAACGAATTCGATGTATTGGCTCATTAGAGCACTGTTCATCCCCACT 439 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||| | || |||| || |||||| | || || || || | ||| ||| | Sbjct 438 AGAGCGCACGGTAACGCGTCGCAGACGAACTCTCTTTCTATATCCACCGAGTCGGCGACG 379 Query 868931 ATCTGCCT 868938 || ||||| Sbjct 378 AT-TGCCT 372 >seq82795 Length=1924 Score = 93.3 bits (102), Expect = 5e-13 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || |||||||| ||||| ||||| ||||| || || | |||||| || || ||||| || Sbjct 264 CCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAA 205 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 ||||| || ||| ||| || ||| || || ||||||||||| ||| ||| | Sbjct 204 ATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCC------G 151 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| | ||||| | ||| || ||| ||| | || | || ||||| ||| Sbjct 150 TCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGCG 91 Query 869399 CGAAAGAG 869406 ||||||| Sbjct 90 TGAAAGAG 83 >seq87083 Length=8042 Score = 87.8 bits (96), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| | | | || || || |||||||||||||| || | || Sbjct 88 GCTTGGCCAACTCGCCGGGAAGTACCAATCGTACTGCGGTCTGGATCTCCCGAGAAGTGA 147 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||| || ||||||| || ||||| | | | |||| | Sbjct 148 TCGTCGGCTTCTTGTTGTAGCGCGCCAGCCGCGATGCCTCCTGGGCAAGTTTCTCGAAGA 207 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||| | ||| | |||| ||||||| || | ||| || | Sbjct 208 TGTCGTTGATGAAGCTGTTCATGATCCCCATGGCCTTGCTGGAGATCCCGATGTCAGGAT 267 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||| ||||| Sbjct 268 GGACCTGCTTCAGCACCTTGAAGATG 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6089869179850748