Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq173968 170 2e-36
seq203223 96.9 4e-14
seq82795 93.3 5e-13
seq87083 87.8 2e-11
>seq173968
Length=7941
Score = 170 bits (188), Expect = 2e-36
Identities = 203/273 (74%), Gaps = 2/273 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||||||||| || ||||| ||||| || || || ||||| | |||| || || |||
Sbjct 7941 GAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGCGACCTGG 7882
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|||||||||||||||| ||||| ||||| ||| ||||| ||||| ||||||||
Sbjct 7881 ACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAGCGGCGAAG 7822
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| || |||| || |||| ||||| ||||||| | |||| |||| | ||||
Sbjct 7821 AAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGGTTTTCCCA-TTGACG 7763
Query 869813 GT-GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871
| ||| |||||| || |||||||||||||| | ||| ||||||||||| |||||
Sbjct 7762 CTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCTCGGCCTTCTTGTA 7703
Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904
||| ||||| |||| |||| | || |||||
Sbjct 7702 CATTTCCCAGACTTCAGGGTACTGAATCGGGAA 7670
>seq203223
Length=1923
Score = 96.9 bits (106), Expect = 4e-14
Identities = 134/188 (71%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278
|| |||||||| ||||| ||||| ||||| || || | |||||| || || ||||| |||
Sbjct 264 CCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAG 205
Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338
||||| || ||| ||| || ||| || || ||||||||||| ||| ||| |
Sbjct 204 ATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCC------G 151
Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398
| |||||| | ||||| | ||| || ||| ||| | || | || ||||| |||
Sbjct 150 TCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGCG 91
Query 869399 CGAAAGAG 869406
|||||||
Sbjct 90 TGAAAGAG 83
Score = 87.8 bits (96), Expect = 2e-11
Identities = 169/248 (68%), Gaps = 1/248 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| |||||| || || | | |||||| ||||||||||| |||| | |||||
Sbjct 618 GCCTTCTGGTACTCCCCAACCCTCTTCTCGAAGAAGTTGGTCTTTCCCTGCAAAGAGATT 559
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
| |||||||| |||||| || | ||||| ||| || | || | | ||
Sbjct 558 AGTTCCATCCAGTCGAACGGATTCGAAACGTTGTACATCTTCCCGTAACCCAAGGCGCCG 499
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|||||||| ||||| || || |||||||| |||| ||| || | |||||| || |
Sbjct 498 AGCAGGCGATCGGCAACGAATTCGATGTATTGGCTCATTAGAGCACTGTTCATCCCCACT 439
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || ||| | || |||| || |||||| | || || || || | ||| ||| |
Sbjct 438 AGAGCGCACGGTAACGCGTCGCAGACGAACTCTCTTTCTATATCCACCGAGTCGGCGACG 379
Query 868931 ATCTGCCT 868938
|| |||||
Sbjct 378 AT-TGCCT 372
>seq82795
Length=1924
Score = 93.3 bits (102), Expect = 5e-13
Identities = 133/188 (71%), Gaps = 6/188 (3%)
Strand=Plus/Minus
Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278
|| |||||||| ||||| ||||| ||||| || || | |||||| || || ||||| ||
Sbjct 264 CCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAA 205
Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338
||||| || ||| ||| || ||| || || ||||||||||| ||| ||| |
Sbjct 204 ATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCC------G 151
Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398
| |||||| | ||||| | ||| || ||| ||| | || | || ||||| |||
Sbjct 150 TCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGCG 91
Query 869399 CGAAAGAG 869406
|||||||
Sbjct 90 TGAAAGAG 83
>seq87083
Length=8042
Score = 87.8 bits (96), Expect = 2e-11
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||||| |||||| | | | || || || |||||||||||||| || | ||
Sbjct 88 GCTTGGCCAACTCGCCGGGAAGTACCAATCGTACTGCGGTCTGGATCTCCCGAGAAGTGA 147
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
|||| |||||| || ||||||| || ||||| | | | |||| |
Sbjct 148 TCGTCGGCTTCTTGTTGTAGCGCGCCAGCCGCGATGCCTCCTGGGCAAGTTTCTCGAAGA 207
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||||| || |||||||| | ||| | |||| ||||||| || | ||| || |
Sbjct 208 TGTCGTTGATGAAGCTGTTCATGATCCCCATGGCCTTGCTGGAGATCCCGATGTCAGGAT 267
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548
| |||||||| ||||||||| |||||
Sbjct 268 GGACCTGCTTCAGCACCTTGAAGATG 293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6089869179850748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |