Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq44755 109 5e-19 seq207794 102 7e-17 seq127437 95.1 1e-14 seq73220 91.5 1e-13 seq45179 91.5 1e-13 seq9834 84.2 2e-11 >seq44755 Length=3421 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| || || | ||||| || ||||| ||| | ||| ||| Sbjct 2740 AATGCAAATATTTGTTAAGACACTCACCGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 2681 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| || | | | ||||| ||| || ||||| ||||| | ||| || || Sbjct 2680 CGATACAGTTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGACCA 2621 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| | |||| ||| || || ||||| ||||||| |||||| |||| ||||| || Sbjct 2620 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGAACGTTGGCAGATTATAA 2561 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| || || || || ||||| |||| Sbjct 2560 CATTCAGAAGGAGTCCACACTGCACCTGGT 2531 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328 ||||||||||||||| || || | || || || ||||| || | ||| |||| | Sbjct 2284 AATGCAAATATTTGTGAAGACACTGACTGGAAAGACCATCACTCTTGAAGTGGAGAGCTC 2225 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || ||| | | || || ||||| ||||| || || | ||| || Sbjct 2224 TGAC---ACAATCGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCCCCAGA 2168 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| || || || || | ||| ||||||||||| ||||||| || || |||| ||||| Sbjct 2167 TCAGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTA 2108 Query 110449 CAACATTCAAAAAGAATCTAC 110469 |||||||||||| ||||| || Sbjct 2107 CAACATTCAAAAGGAATCCAC 2087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG--AGC-C 110328 ||||||||||||||| || || | || || || ||||| || | || || ||| | Sbjct 2512 AATGCAAATATTTGTAAAGACACTGACTGGAAAGACCATCACACTTGAGGTGGAAAGCTC 2453 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | ||||| ||| | | ||||| ||| || ||||| ||||| | ||| || Sbjct 2452 T---GATACAATCGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCAGA 2396 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 || ||||| | |||| ||| || || ||||| ||||||| ||| || |||| ||||| Sbjct 2395 CCAGCAAAGGTTGATTTTTGCCGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTA 2336 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||| || || || || | ||| | || | | ||| |||| |||| Sbjct 2335 TAACATTCAGAAGGAGTCCACACTCCACCTTGTTCTTCGCCTGAGAGGTGGAA 2283 >seq207794 Length=1432 Score = 102 bits (112), Expect = 7e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328 ||||||||||||||| || || | ||||| || ||||| || | ||| |||| | Sbjct 1116 AATGCAAATATTTGTGAAGACACTGACCGGAAAGACCATCACTCTTGAAGTGGAGAGCTC 1057 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || ||| | | || || ||||| ||||| || || | ||| || Sbjct 1056 TGAC---ACAATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCCGA 1000 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| || || || || | ||| ||||||||||| ||||||| || || |||| ||||| Sbjct 999 TCAGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTA 940 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||||| ||||| || | ||| |||| Sbjct 939 CAACATTCAAAAGGAATCCACCCTTCACCTGGT 907 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGG--AGC-C 110328 ||||||||||||||| || || |||| || || ||||| || | || || ||| | Sbjct 1344 AATGCAAATATTTGTAAAGACACTAACTGGAAAGACCATCACGCTTGAGGTGGAAAGCTC 1285 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | ||||| ||| | | ||||| || || ||||| ||||| | ||| || Sbjct 1284 T---GATACAATCGACAATGTAAAGGCAAAAATCCAAGACAAGGAAGGAATCCCCCCAGA 1228 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 || ||||| | |||| ||| || || ||||| ||||||| ||| || |||| ||||| Sbjct 1227 CCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTA 1168 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||| || || || || | ||| | || | | ||| |||| |||| Sbjct 1167 TAACATTCAGAAGGAGTCCACACTCCACCTTGTTCTTCGCCTGAGAGGTGGAA 1115 >seq127437 Length=6100 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| || || | || || || ||||| ||| | ||| ||| Sbjct 2697 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGCTC 2638 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | ||||| ||| || ||||| ||||| | ||| ||||| Sbjct 2637 TGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATCA 2578 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| | |||| ||| || || ||||| ||||||| ||| || |||| ||||| || Sbjct 2577 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATAA 2518 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| ||||| || || | ||| |||| Sbjct 2517 CATTCAGAAAGAGTCCACACTCCACCTGGT 2488 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328 ||||||||||||||| || || | ||||| || ||||| || | || |||| | Sbjct 2241 AATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAGGTGGAGAGCTC 2182 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || ||| | | || || |||||| ||||| || || | ||| || Sbjct 2181 TGAC---ACAATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAGGGTATCCCCCCAGA 2125 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| || || || || | ||| ||||||||||| ||||||| || || |||| ||||| Sbjct 2124 TCAGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACCCTGGCTGATTA 2065 Query 110449 CAACATTCAAAAAGAATCTAC 110469 |||||| ||||| ||||| || Sbjct 2064 CAACATACAAAAGGAATCCAC 2044 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| || || | || || |||||||| ||| | ||| ||| | Sbjct 2469 AATGCAAATCTTTGTTAAGACACTCACTGGAAAAACCATCACCCTTGAAGTAGAGAGTTC 2410 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | ||||| || || ||||| || || | ||| || || Sbjct 2409 TGACACGATTGACAATGTAAAGGCAAAAATCCAAGACAAGGAGGGAATCCCCCCAGACCA 2350 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || || | ||| ||||||||||| ||||||| | || |||| |||||||| Sbjct 2349 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGGACCTTGGCAGATTACAA 2290 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| ||||| || || | || |||| | | ||| |||| |||| Sbjct 2289 CATTCAGAAAGAGTCCACCCTTCATTTGGTTCTCCGGCTGAGAGGTGGAA 2240 >seq73220 Length=12354 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||||||||| |||| || || ||||| || | ||| ||| | Sbjct 7828 AATGCAAATATTTGTCAAAACGCTAACTGGAAAGACCATCACACTTGAAGTTGAGAGTTC 7769 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || || ||||| ||||| || || | || || || Sbjct 7768 AGATACAATTGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 7709 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | ||| ||||| ||||||||||||| | | ||| |||| ||||| || Sbjct 7708 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTGATTATAA 7649 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || || || || || | ||| |||| | | ||| |||| || Sbjct 7648 CATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGTCTGAGAGGTGG 7601 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || ||||| || || ||||| || ||||| || || | ||| ||| || | Sbjct 6915 ATGCAGATTTTTGTGAAGACCTTAACTGGTAAAACAATCACTCTTGAAGTTGAGAGCTCA 6856 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || || || ||| ||||| |||||| | || || || Sbjct 6855 -GACACAATTGACAATGTCAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCTGACCA 6797 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || || || | ||| || |||||||| ||||||| | | || |||| || ||||| Sbjct 6796 ACAGAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTTTGGCCGACTACAA 6737 Query 110452 CATTCAAAAAGAATCTACGTTGCAC 110476 ||| || |||||||||||| | ||| Sbjct 6736 CATACAGAAAGAATCTACGCTTCAC 6712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || || | || || ||||| |||||| | ||| ||| | Sbjct 7371 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATTACCCTTGAAGTTGAGAGTTCA 7312 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || || ||||| || || | ||| || || Sbjct 7311 GACACCATCGATAATGTGAAAGCTAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 7252 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | |||||||||||||||||| |||| | ||| ||||||| |||||| Sbjct 7251 CAGAGGCTCATATTTGCGGGTAAACAGCTGGAAGATGGTCGGACATTGGCGGACTACAAC 7192 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || || ||||| | ||| |||| Sbjct 7191 ATCCAGAAGGAGTCTACCCTTCACTTGGT 7163 >seq45179 Length=1454 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 |||||| || ||||| |||||| | ||||| || || ||||| | || || | || Sbjct 557 AATGCAGATTTTTGTTAAAACTCTGACCGGAAAGACAATTACTCTAGAGGTCGAAAGCTC 498 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||| || ||| | | || ||| ||||| || || || ||| | || ||| | Sbjct 497 -CGACACCATCGACAACGTGAAAGCTAAGATCCAGGATAAGGAGGGCATTCCACCGGACC 439 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || || |||| || ||||| |||||||| || | | |||| | |||||||||| Sbjct 438 AGCAGAGGCTGATTTTCGCAGGTAAGCAGCTGGAAGACGGCCGAACTCTCGCGGATTACA 379 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||| ||||| || || | ||| ||||| | | ||||| || || Sbjct 378 ACATTCAGAAAGAGTCAACCCTCCACTTGGTGCTTCGTCTGCGTGGTGG 330 >seq9834 Length=2319 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| || ||||| ||||| | ||||| || ||||| ||| | || || | || Sbjct 55 ATGCAGATTTTTGTGAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTCGAAAGCTC- 113 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | | || ||| ||||||| ||||| ||||| | || || || Sbjct 114 CGACACCATTGACAACGTGAAAGCGAAGATTCAGGACAAGGAAGGGATTCCACCAGACCA 173 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||||| |||| || || || ||||| ||||||| |||| | || |||||||| Sbjct 174 GCAGAGACTGATTTTCGCCGGCAAGCAGCTTGAGGATGGGCGAACTCTTGCTGATTACAA 233 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || || || || | ||| ||||| | | ||||| || || Sbjct 234 CATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGTCTGCGCGGTGG 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411782749540892