Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq173968 134 2e-25 seq87083 120 5e-21 seq29178 114 2e-19 seq203223 109 9e-18 seq82795 105 1e-16 >seq173968 Length=7941 Score = 134 bits (148), Expect = 2e-25 Identities = 181/250 (72%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||||||||||||||| | ||||| ||||| || ||||| ||| Sbjct 7896 GCCTCGGCGACCTGGACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCG 7837 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || |||||||| ||||| |||| || |||| ||||| ||||||| | |||| Sbjct 7836 TCAGAAGCGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGG 7777 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||| || | ||| ||||||||| ||||||||||||||||| || ||| Sbjct 7776 TTTTCCCATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCC 7717 Query 796330 TCGGCCTTTTTGTACATCTCCCATA--TCCGTTGGTAGCGGATGGGGAACAGAACAAAGC 796387 |||||||| |||||||| ||||| | || | |||| | || ||||||| | || | Sbjct 7716 TCGGCCTTCTTGTACATTTCCCAGACTTCAG--GGTACTGAATCGGGAACATACAGAACC 7659 Query 796388 GATTGGGGTT 796397 ||| ||||| Sbjct 7658 GATCTGGGTT 7649 >seq87083 Length=8042 Score = 120 bits (132), Expect = 5e-21 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || ||||||||||| ||||| || || |||||| |||||| |||||| | | Sbjct 49 TGAACTTCGTTACGGCCTTGGTTCCCTCCGAAACAGCGTGCTTGGCCAACTCGCCGGGAA 108 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || |||||||||||||| || | |||||| |||||| || Sbjct 109 GTACCAATCGTACTGCGGTCTGGATCTCCCGAGAAGTGATCGTCGGCTTCTTGTTGTAGC 168 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| || ||||| | | | |||| |||||||||| || ||||| Sbjct 169 GCGCCAGCCGCGATGCCTCCTGGGCAAGTTTCTCGAAGATGTCGTTGATGAAGCTGTTCA 228 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| ||||||| || | ||| || || |||||||| ||||||||| Sbjct 229 TGATCCCCATGGCCTTGCTGGAGATCCCGATGTCAGGATGGACCTGCTTCAGCACCTTG 287 Score = 111 bits (122), Expect = 2e-18 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || ||||||||||| |||||||| ||||||||| |||||| |||||| | | Sbjct 4469 TGAACTTCGTTACGGCCTTGGTGCCCTCTGAAACGGCGTGCTTGGCCAACTCGCCGGGAA 4528 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||| ||||||||||| || | |||||| |||||| | Sbjct 4529 GCACCAATCGGACGGCCGTCTGGATCTCCCGAGAAGTGATCGTCGGCTTCTTGTTGTAAC 4588 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||||||| || ||||| || | || |||| |||||||||| || |||| Sbjct 4589 GCGCCAGCCGCGATGCCTC-CTGAGCAAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTC 4647 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| ||| | ||| ||||||| || | ||| || || ||||| || | |||||| Sbjct 4648 ATGATCCCCATGGCCTTGCTGGAGATCCCGATGTCAGGATGGACCTGTTTCAAGACCTTG 4707 >seq29178 Length=4905 Score = 114 bits (126), Expect = 2e-19 Identities = 171/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || ||||||||||| |||||||| ||||||||| |||||| |||||| | | Sbjct 3278 TGAACTTCGTTACGGCCTTGGTGCCCTCTGAAACGGCGTGCTTGGCCAACTCGCCGGGAA 3337 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||| ||||||||||| || | |||||| |||||| | Sbjct 3338 GCACCAATCGGACGGCCGTCTGGATCTCCCGAGAAGTGATCGTCGGCTTCTTGTTGTAAC 3397 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTTC 1485648 ||||||| || | ||||| || | || |||| |||||||||| || |||| Sbjct 3398 GCGCCAGCCGCGCTGCCTC-CTGAGCAAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTC 3456 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| ||| | ||| ||||||| || | ||| || || ||||| || | |||||| Sbjct 3457 ATGATCCCCATGGCCTTGCTGGAGATCCCGATGTCAGGATGGACCTGTTTCAAGACCTTG 3516 >seq203223 Length=1923 Score = 109 bits (120), Expect = 9e-18 Identities = 186/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || |||||||| ||||| ||||| ||||| || || | ||||| || || ||||| ||| Sbjct 264 CCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAG 205 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 ||||| || ||| ||| || ||| || || |||||||| || || ||| || Sbjct 204 ATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGTC---- 149 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| | ||||||| || || ||| ||| |||| | || ||||| ||| Sbjct 148 --GATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGCG 91 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 ||||||| || ||||| || ||||||| || | || | | || ||| Sbjct 90 TGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGTAC 31 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATC 794649 |||| |||||||||||||| ||||| ||| Sbjct 30 ATCTCAGAGTGGATGTTTTCAATGGCAATC 1 Score = 89.7 bits (98), Expect = 8e-12 Identities = 171/244 (70%), Gaps = 11/244 (5%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| || || | | |||||| ||||||||||| |||| | ||||| | |||||| Sbjct 609 TACTCCCCAACCCTCTTCTCGAAGAAGTTGGTCTTTCCCTGCAAAGAGATTAGTTCCATC 550 Query 793968 CACGGGAACGGGTTGG--CCGTCAGGTAGTGCTTCTCGCACCCGA--GCGACGCAAGCAG 794023 || |||||| || | ||| ||| |||| || | || | ||| || ||||| Sbjct 549 CAGTCGAACGGATTCGAAACGT--TGTACATCTTCCCGTAACCCAAGGCGCCG--AGCAG 494 Query 794024 GCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC 794083 ||| ||||| |||||||| ||||| |||| ||| || || |||||| || | || || Sbjct 493 GCGATCGGCAACGAATTCGATGTATTGGCTCATTAGAGCACTGTTCATCCCCACTAGAGC 434 Query 794084 -CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||| || | || |||| ||| |||||| | || || || || | ||| || ||| | Sbjct 433 GCAC-GGTAACGCGTCGCAGACGAACTCTCTTTCTATATCCACCGAGTCGGCGACGAT-T 376 Query 794143 GCCT 794146 |||| Sbjct 375 GCCT 372 >seq82795 Length=1924 Score = 105 bits (116), Expect = 1e-16 Identities = 185/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || |||||||| ||||| ||||| ||||| || || | ||||| || || ||||| || Sbjct 264 CCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAA 205 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 ||||| || ||| ||| || ||| || || |||||||| || || ||| || Sbjct 204 ATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGTC---- 149 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| | ||||||| || || ||| ||| |||| | || ||||| ||| Sbjct 148 --GATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGCG 91 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 ||||||| || ||||| || ||||||| || | || | | || ||| Sbjct 90 TGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGTAC 31 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATC 794649 |||| |||||||||||||| ||||| ||| Sbjct 30 ATCTCGGAGTGGATGTTTTCAATGGCAATC 1 Score = 87.8 bits (96), Expect = 3e-11 Identities = 176/253 (70%), Gaps = 11/253 (4%) Strand=Plus/Minus Query 793899 GCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 793958 ||||| ||| || || || | | |||||| ||||||||||| |||| | ||||| Sbjct 618 GCCTTCTGATATTCCCCAACCCTCTTCTCGAAGAAGTTGGTCTTTCCCTGCAAAGAGATT 559 Query 793959 AACTCCATCCACGGGAACGGGTTGG--CCGTCAGGTAGTGCTTCTCGCACCCGA--GCGA 794014 | ||||||||| |||||| || | ||| ||| |||| || | || | ||| Sbjct 558 AGCTCCATCCAGTCGAACGGATTCGAAACGT--TGTACATCTTCCCGTAACCCAAGGCGC 501 Query 794015 CGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCC 794074 || |||||||| ||||| |||||||| ||||| || | ||| || || |||||| || Sbjct 500 CG--AGCAGGCGATCGGCAACGAATTCGATGTATTGACTCATTAGAGCACTGTTCATCCC 443 Query 794075 GATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGA 794133 | || || ||| || | || |||| ||| |||||| | || || || || | ||| Sbjct 442 CACTAGAGCGCAC-GGTAACGCGTCGCAGACGAACTCTCTTTCTATATCCACCGAGTCGG 384 Query 794134 TGATGATCTGCCT 794146 || ||| ||||| Sbjct 383 CGACGAT-TGCCT 372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7893860511884916