Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq73220 100 2e-16 seq45179 100 2e-16 seq207794 89.7 4e-13 seq121659 86.0 5e-12 seq44755 86.0 5e-12 seq76175 82.4 6e-11 seq2835 82.4 6e-11 >seq73220 Length=12354 Score = 100 bits (110), Expect = 2e-16 Identities = 170/246 (69%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || | || || ||||| |||||| | ||| ||| | Sbjct 7371 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATTACCCTTGAAGTTGAGAGTTCA 7312 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| || || || || || || | ||| || ||| Sbjct 7311 GACACCATCGATAATGTGAAAGCTAAAATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 7252 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | |||||||||||||||||| || | ||| |||||||||||||| Sbjct 7251 CAGAGGCTCATATTTGCGGGTAAACAGCTGGAAGATGGTCGGACATTGGCGGACTACAAC 7192 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 || || ||||||||||| | ||| |||| | | ||| |||| || || |||| Sbjct 7191 ATCCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGTTTGAGAGGTGG----CATGCAAAT 7136 Query 107796 ATTTGT 107801 |||||| Sbjct 7135 ATTTGT 7130 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| ||||||||||| |||| || || ||||| || | ||| ||| | Sbjct 7828 AATGCAAATATTTGTCAAAACGCTAACTGGAAAGACCATCACACTTGAAGTTGAGAGTTC 7769 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| || || || || | || || || Sbjct 7768 AGATACAATTGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACCA 7709 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||| ||||||||||| | | ||| |||| || || || Sbjct 7708 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTGATTATAA 7649 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || | ||| |||| Sbjct 7648 CATCCAGAAGGAGTCCACCCTTCACTTGGT 7619 >seq45179 Length=1454 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTG 107613 |||||| |||||||| |||||| | || || || || ||||| | || || | ||| Sbjct 557 AATGCAGATTTTTGTTAAAACTCTGACCGGAAAGACAATTACTCTAGAGGTCGAAAGCTC 498 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||| || ||| | | || ||| ||||| ||||| || ||| | || ||| | Sbjct 497 -CGACACCATCGACAACGTGAAAGCTAAGATCCAGGATAAGGAGGGCATTCCACCGGACC 439 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || |||| || ||||| |||||||| |||| | ||| | ||||| |||| Sbjct 438 AGCAGAGGCTGATTTTCGCAGGTAAGCAGCTGGAAGACGGCCGAACTCTCGCGGATTACA 379 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||| || ||||| || | ||| ||||| Sbjct 378 ACATTCAGAAAGAGTCAACCCTCCACTTGGTG 347 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| |||||| | || || || ||||| ||| | || ||| ||| Sbjct 1240 ATGCAGATCTTTGTTAAAACTCTTACCGGAAAGACCATAACCCTAGAGGTTGAGAGCTC- 1182 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | || || ||||| || ||||| ||| | || |||||| Sbjct 1181 CGACACGATCGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCGGATCA 1122 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || |||||||| || |||| |||| |||| |||||||| Sbjct 1121 GCAGAGGCTGATATTCGCCGGGAAACAGCTTGAAGACGGTCGAACACTGGCCGACTACAA 1062 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || |||||| | ||| Sbjct 1061 CATCCAGAAGGAGTCCACCTTGCACTTAGTG 1031 >seq207794 Length=1432 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || || || ||||| || | ||| |||| ||| Sbjct 1116 AATGCAAATATTTGTGAAGACACTGACCGGAAAGACCATCACTCTTGAAGTGGAGAGCTC 1057 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | || || |||||| || || || || | ||| |||| Sbjct 1056 T-GACACAATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCCGATC 998 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| ||||||||||| ||||| | | || |||| || |||| Sbjct 997 AGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACA 938 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||| || || | ||| |||| Sbjct 937 ACATTCAAAAGGAATCCACCCTTCACCTGGT 907 >seq121659 Length=2328 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 ||||| |||||||| ||||| | || || || ||||| ||| | || || | ||| Sbjct 317 ATGCAGATTTTTGTGAAAACCCTTACCGGGAAGACCATCACCCTGGAGGTCGAAAGCTC- 259 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||||| ||||| || ||| | || || || Sbjct 258 CGACACCATTGACAACGTGAAGGCTAAGATCCAGGATAAGGAGGGCATTCCACCAGACCA 199 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || ||||| |||||||| || | | ||| | || |||||||| Sbjct 198 GCAGAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGAACCCTCGCCGACTACAA 139 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||| ||||| || ||||| ||||| Sbjct 138 CATTCAAAAAGAGTCAACTCTGCACTTGGTG 108 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||||||||| | || || || || || ||| | || ||| ||| | Sbjct 773 ATGCAGATCTTTGTCAAAACCCTTACCGGAAAGACAATAACCCTAGAGGTTGAGAGCTCG 714 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || ||||| || ||||| ||| | || |||||| Sbjct 713 -GACACGATCGATAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCGGATCA 655 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| || |||| |||| |||| |||||||| Sbjct 654 GCAGAGGCTGATATTCGCCGGGAAGCAGCTTGAAGACGGTCGAACACTGGCCGACTACAA 595 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || |||||| | ||| Sbjct 594 CATCCAGAAGGAGTCCACCTTGCACTTAGTG 564 >seq44755 Length=3421 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || || || ||||| || | ||| |||| ||| Sbjct 2284 AATGCAAATATTTGTGAAGACACTGACTGGAAAGACCATCACTCTTGAAGTGGAGAGCTC 2225 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | || || |||||| || || || || | ||| |||| Sbjct 2224 T-GACACAATCGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCCCCAGATC 2166 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| ||||||||||| ||||| | | || |||| || |||| Sbjct 2165 AGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACA 2106 Query 107734 ACATTCAAAAGGAGTCTAC 107752 ||||||||||||| || || Sbjct 2105 ACATTCAAAAGGAATCCAC 2087 >seq76175 Length=8586 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| |||| || || ||||| ||| | || || | Sbjct 2254 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCG 2313 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || || ||||| || || |||||| | || ||| Sbjct 2314 TCTGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2373 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | ||||| | || || |||||||||||||||| | ||| | || |||||| Sbjct 2374 CAGCAGCGTCTTATCTTCGCTGGAAAACAGCTGGAGGACGGCCGAACCCTAGCCGACTAC 2433 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || |||||||| || | ||| ||||| Sbjct 2434 AACATCCAGAAGGAGTCGACCCTCCACCTGGTG 2466 >seq2835 Length=4848 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || ||||| ||||| |||| || || ||||| ||| | || || | Sbjct 581 AAGATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCA 640 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || || ||||| || || |||||| | || ||| Sbjct 641 TCTGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 700 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || |||||||||||||||| | ||| | || |||||| Sbjct 701 CAGCAGCGTCTCATCTTCGCTGGAAAACAGCTGGAGGACGGCCGAACCCTAGCCGACTAC 760 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || |||||||| || | ||| ||||| Sbjct 761 AACATCCAGAAGGAGTCGACCCTCCACCTGGTG 793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397853766267916