Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq43099 129 6e-25 >seq43099 Length=3685 Score = 129 bits (142), Expect = 6e-25 Identities = 242/356 (68%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 159417 GCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACT 159476 ||||| || ||| ||| ||| || ||||| || |||| |||||||| ||||| | Sbjct 2286 GCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAACTTATTCAATGGTAATC 2227 Query 159477 GCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCAT 159536 || ||||| || | || | ||||| | ||| ||||| || || | ||| | ||| Sbjct 2226 GCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAATAAATGTTGGTTACAT 2167 Query 159537 TTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGT 159596 |||||| |||| || || || | | | |||||| | |||| | ||||| Sbjct 2166 TTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2107 Query 159597 CTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGAT 159656 || ||||| || | |||| || | ||||| ||||| ||| | || |||||| Sbjct 2106 CTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAATCCATGTAGTGGAAGAT 2047 Query 159657 CCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGG 159716 || |||||||| | ||||||||||| || ||||| | |||||||| | | | ||||| Sbjct 2046 CCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCATACTTGG 1987 Query 159717 TTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACC 159772 ||||| | ||||| || |||||||| | || ||| | || || ||| |||| Sbjct 1986 ATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGAGGAGGTTATACC 1931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543839230531520