Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq43099 113 5e-20 seq161624 96.9 4e-15 seq129087 96.9 4e-15 seq127763 95.1 1e-14 seq204425 93.3 5e-14 >seq43099 Length=3685 Score = 113 bits (124), Expect = 5e-20 Identities = 248/372 (67%), Gaps = 0/372 (0%) Strand=Plus/Minus Query 179565 TGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAGAC 179624 ||||||||| || ||||| |||||| || || | | || || |||| || Sbjct 2302 TGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAAC 2243 Query 179625 CTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAA 179684 ||||| ||||| | || |||||||||| || | ||||| ||||| ||| ||| Sbjct 2242 TTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAA 2183 Query 179685 TAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTC 179744 ||| ||||||| || |||||| | | || || || | | | | ||| | | | Sbjct 2182 TAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGC 2123 Query 179745 TATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGAT 179804 | |||| | |||| |||||||| || | |||| ||| | || || ||||| || Sbjct 2122 TCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAAT 2063 Query 179805 CAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGA 179864 | | || ||||||||||| || |||| ||||| || || || ||||| | ||||| Sbjct 2062 CCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGA 2003 Query 179865 AGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGA 179924 ||| | | | ||||| ||||| | ||||| || |||||||| | || ||| | || Sbjct 2002 AGGTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGA 1943 Query 179925 AGAAGTCCTACC 179936 || || |||| Sbjct 1942 GGAGGTTATACC 1931 >seq161624 Length=13970 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 177896 TGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGC 177955 ||||||||||||| || |||| | ||||||||| ||||| ||||||||| || | Sbjct 9739 TGAGTGGGAACTTAGATTTTGTCTGGATATGCGCCCTTGGATTGTTGTTGCATATTCAAC 9798 Query 177956 ACCTGTTGCAGCAGCATCCGCAGTCTTTCTAGTCTATCCTT-TCGGTCAAGGTTCATTCT 178014 | ||||| || | | | || ||||| | | ||| |||||||| || | Sbjct 9799 TCTTGTTGTAGTTACTACTGTTGT-TTTCTTGATCAACCTAATCGGTCAATAAAACTTTT 9857 Query 178015 CCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAG 178074 | || ||||||||| || | | || |||||| |||| ||| |||||||||| || | Sbjct 9858 CTAATTGTATGCCTCTAGGACTTTTTGATACTTTCAACTTCATAATTGTATTCCAGGCTG 9917 Query 178075 AACACAATATCCTTATGCACCCGTTCCACA 178104 | ||| |||||||||||||| ||||||| Sbjct 9918 AGTACATCATCCTTATGCACCCATTCCACA 9947 >seq129087 Length=3483 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 179260 CTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTA 179318 ||||| || |||||| | ||||| || ||||| || || | | || | | || ||||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAAT-TGCGACCTTA 303 Query 179319 CAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCC 179378 |||||| || || || ||| ||| |||| || || ||| |||||| || || || || Sbjct 304 CAATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCC 363 Query 179379 ACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATT 179438 | | || || || ||||| ||| || ||| |||||||| | | || ||| |||| Sbjct 364 ATTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATT 423 Query 179439 CCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATG 179493 | | || || | ||||| || | || ||||| | ||||| ||||| ||| || Sbjct 424 CATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq127763 Length=4742 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 138529 GATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGT 138588 |||||| ||||| | || | ||||| || |||||| |||| || || || || || Sbjct 1732 GATGATGCATACATATTAGACTCAGCTGAGGATGCAGGTGTTGAGCTACCTTATTCTTGC 1791 Query 138589 CGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCT 138648 | ||||| ||||| ||||||||||| || || | ||| ||| | || || |||||| Sbjct 1792 AGGGCTGGGGCATGCTCTACCTGTGCAGGGCAAATGGTTTCAGGTTCAGTGGACCAGTCT 1851 Query 138649 GACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCATGACTTGCGTAGC 138707 || || ||||||||||| | || | || || ||| || | | | |||||| | | Sbjct 1852 GATGGATCCTTCCTTGATGACAAGCAGA-TGGAGAAGGGTTATTTGCTAACTTGCATTTC 1910 Query 138708 ATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGA 138746 |||||| || || |||||| | ||| | ||| | || || Sbjct 1911 ATACCCAACTTCAGATTGTGTGATTCACACTCACAAGGA 1949 >seq204425 Length=9683 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 138565 GGTATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTA 138624 ||||||||||| |||||||| || |||||||| | || || |||| || || | | Sbjct 481 GGTATTGATCTGCCCTACTCGTGCCGTGCTGGGTCTTGCTCCTCCTGCGCCGGGAGGGTG 540 Query 138625 GTTGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCA 138684 || ||||| ||||| |||||||||||| | |||||||| ||||| || || | | Sbjct 541 GTGGAAGGCACTGTGGATCAGTCTGACGGGAGCTTCCTTGAGGATGAGCAGATGGAGGAT 600 Query 138685 GGATTTATCATGACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAA 138744 |||| | ||||||| || || || || |||||| | | ||||| || | || Sbjct 601 GGATGGGTTCTGACTTGTGTTGCTTATCCTCAGTCCGATCTTGTGATTGAGACCCACAAG 660 Query 138745 GAGGACGAACT 138755 ||||| || || Sbjct 661 GAGGAGGAGCT 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604073962147040