Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq84576 100 2e-16 seq9834 100 2e-16 seq127437 96.9 2e-15 seq44755 93.3 3e-14 seq73220 91.5 1e-13 seq2835 89.7 3e-13 seq76562 86.0 4e-12 seq45179 82.4 5e-11 >seq84576 Length=1122 Score = 100 bits (110), Expect = 2e-16 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||| || || ||||||||||| | ||||| || | || ||| Sbjct 803 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACCATCCTCC 862 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 || || || || ||||| |||| | |||||||||| | || | || || ||||| | Sbjct 863 AACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTGA 922 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 ||||| ||| |||| || | |||||| ||| ||||| || | |||||||| Sbjct 923 ATTTTGGCCTTC-ACATTATCTATGGTGTCTGAGCT---CTCCACCTCTAGTGTGATCGT 978 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || ||||| | || || ||||| ||||||||| Sbjct 979 CTTTCCTGTCAGGGTCTTCACAAATATCTGCATA 1012 >seq9834 Length=2319 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || || ||| ||| || || ||||||||||| | Sbjct 282 ACCACCGCGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGC 223 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || || ||||| ||||||| | |||||| ||| | || Sbjct 222 AAGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGG 163 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| ||| |||| || | ||| | ||||||| ||| | Sbjct 162 AATCCCTTCCTTGTCCTGAATCTTCGCTTTC-ACGTTGTCAATGGTGTCGGAGCTTTCGA 104 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || | ||||| ||||| |||||||| Sbjct 103 CCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 55 >seq127437 Length=6100 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||| || || ||||||||||| | ||||| || | || ||| Sbjct 1804 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACCATCCTCC 1863 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 || || || || ||||| |||| | |||||||||| | || | || || ||||| | Sbjct 1864 AACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTGA 1923 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 ||||| ||| |||| || | |||||| ||| ||||| || | |||||||| Sbjct 1924 ATTTTGGCCTTC-ACATTATCTATGGTGTCTGAGCT---CTCCACCTCTAGTGTGATCGT 1979 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || | || || ||||| ||||||||| Sbjct 1980 CTTTCCCGTCAGGGTCTTCACAAATATCTGCATA 2013 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | |||| || || ||| |||||| || ||||| ||||||| Sbjct 2698 CCACCTCTCAAACGAAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCGGCC 2757 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | || || | || ||||| ||||||||||| | ||||| || | || Sbjct 2758 AAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGG 2817 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| | | ||||| ||| | ||| || |||||| Sbjct 2818 ATACCCTCCTTGTCTTGGATTTTC-GCCTTAACATTGTCAATGGTATCAGAACTTTCCAC 2876 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || || | || || |||||||||||||| Sbjct 2877 TTCAAGGGTTATAGTCTTCCCAGTAAGGGTCTTAACAAAGATCTGCAT 2924 >seq44755 Length=3421 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | || | || || ||| |||||| || ||||| ||||| | Sbjct 2741 CCACCTCTCAAACGAAGGACGAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCTGCC 2800 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | || || | || ||||| ||||||||||| | ||||| || | || Sbjct 2801 AAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGG 2860 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| |||||| | | ||||| ||| | ||| || |||||| Sbjct 2861 ATACCTTCCTTGTCTTGGATTTTC-GCCTTAACATTGTCAATGGTATCAGAACTTTCCAC 2919 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || || | ||||| |||||||||||||| Sbjct 2920 TTCAAGGGTTATAGTCTTCCCAGTAAGGGTTTTAACAAAGATCTGCAT 2967 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| ||| || || ||||||||||| | || || || | || ||| Sbjct 1847 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCATCCTCC 1906 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 || || || || ||||| || | | |||||||||| | || | ||||| ||||| | Sbjct 1907 AACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTGA 1966 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 ||||| || | |||| || | |||||| ||| ||||| || | || ||||| Sbjct 1967 ATTTT-TGCCTTCACATTATCTATGGTGTCTGAGCT---CTCCACCTCTAGTGTAATCGT 2022 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| | || || ||||| |||||||| Sbjct 2023 CTTTCCTGTCAGGGTCTTCACAAATATCTGCAT 2055 >seq73220 Length=12354 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| ||||||||||| |||| | ||||| | || || | |||||||| ||||| Sbjct 6725 TCTTTCTGTATGTTGTAGTCGGCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 6784 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| | ||| || || | || | ||||| ||||| |||||| || | |||| Sbjct 6785 ATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATTTT-TGCCTTGACATT 6843 Query 33679 GTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTT 33734 ||| | ||||| ||| || || |||| ||||| |||||||| ||||| || || Sbjct 6844 GTCAATTGTGTCTGAGCT---CTCAACTTCAAGAGTGATTGTTTTACCAGTTAAGGTCTT 6900 Query 33735 TACAAAGATCTGCATA 33750 ||||| ||||||||| Sbjct 6901 CACAAAAATCTGCATA 6916 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| | || | ||||| ||| ||||||||| ||||| ||||||| Sbjct 7829 CCTCCTCTCAAACGAAGTACAAGGTGTAGGGTGGACTCTTTTTGAATGTTATAATCGGCC 7888 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | || || | || ||||| ||||||||||| | ||||| || | || Sbjct 7889 AAAGTCCTACCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGG 7948 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| ||||| || | ||||| ||| | ||| || || || Sbjct 7949 ATACCCTCCTTGTCTTGGATTTT-TGCCTTAACATTGTCAATGGTATCAGAACTCTCAAC 8007 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || ||||| || || | || || |||||||||||||| Sbjct 8008 TTCAAGAGTTATGGTTTTTCCAGTAAGGGTCTTAACAAAGATCTGCAT 8055 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | ||||| || || || ||| || || |||||||| || | Sbjct 7145 CCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 7204 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| || | || |||| ||||| || ||||| || | | |||||| ||| | || Sbjct 7205 AATGTCCGACCATCTTCCAGCTGTTTACCCGCAAATATGAGCCTCTGCTGGTCTGGGGGA 7264 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||| || ||||| ||||| |||| |||| || | |||||| ||| || Sbjct 7265 ATACCCTCCTTGTCCTGGATTTTAGCTTTC-ACATTATCGATGGTGTC---TGAACTCTC 7320 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || ||||| || || | || || ||||| || ||||| Sbjct 7321 AACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 7371 >seq2835 Length=4848 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| |||| || || || |||| || Sbjct 793 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTC 734 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || |||||||| || || || | ||||||||| || | || | ||||| ||||| Sbjct 733 CAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTG 674 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | ||| ||| | |||||| |||||| || || | || || || | Sbjct 673 GATCTTAGCCTTGA-CATTGTCGATGGTGTCAGATGATTCAACCTCTAGGGTTATGGTCT 615 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| |||||||||||||| Sbjct 614 TCCCCGTTAGGGTTTTCACAAAGATCTGCAT 584 >seq76562 Length=2025 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||||||||| ||||| ||||| | || ||||| | || ||||||||| Sbjct 1693 TGAAGTGTGGACTCTTTTTGGATGTTATAATCTGCAAGAGTGCGACCATCTTCCAATTGT 1752 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 || || ||||||||||| | ||||||||| | || | ||||| ||||| Sbjct 1753 TTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCCTTGTC 1802 >seq45179 Length=1454 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || || || |||||| || ||||||||||| | Sbjct 329 ACCACCACGCAGACGAAGCACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGC 388 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| |||| || || || || ||||||| | |||||| || | || Sbjct 389 GAGAGTTCGGCCGTCTTCCAGCTGCTTACCTGCGAAAATCAGCCTCTGCTGGTCCGGTGG 448 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || || || |||| || | ||| | ||||||| ||| | Sbjct 449 AATGCCCTCCTTATCCTGGATCTTAGCTTTC-ACGTTGTCGATGGTGTCGGAGCTTTCGA 507 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || || || | ||||| ||||| |||||||| Sbjct 508 CCTCTAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACAAAAATCTGCAT 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327860944500480