Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq207794 96.9 3e-15 seq73220 84.2 2e-11 seq83787 82.4 7e-11 >seq207794 Length=1432 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||| | |||||||| | ||||| | ||||| || | Sbjct 1115 ATGCAAATATTTGTGAAGACACTGACCGGAAAGACCATCACTCTTGAAGTGGAGAGCTCT 1056 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||| || || || |||||||| || ||||||||| Sbjct 1055 GACACAATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAG 996 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || ||||| | | || ||||| || || |||| || | | | |||||||| Sbjct 995 CAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAAC 936 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 |||||||| ||||||||| |||| Sbjct 935 ATTCAAAAGGAATCCACCCTTCA 913 >seq73220 Length=12354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || |||||| | || || | ||||| || Sbjct 8055 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACCATAACTCTTGAAGTTGAGAGTTCT 7996 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || |||||| || || |||||||| || || || ||| Sbjct 7995 GATACCATTGACAATGTTAAGGCAAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 7936 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| | |||| | || || || ||||| |||| ||| | | | |||||| || Sbjct 7935 CAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGTAGGACTTTGGCCGATTATAAC 7876 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||||||| |||||| | || | || | | ||||||||||||| Sbjct 7875 ATTCAAAAAGAGTCCACCCTACACCTTGTACTTCGTTTGAGAGGAGGAA 7827 >seq83787 Length=2295 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || ||||| | || || | ||||||||| | | Sbjct 1908 ATGCAGATATTTGTGAAAACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCC 1967 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| || || || || |||||||| || || || ||| Sbjct 1968 GACACGATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 2027 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | | |||||| || |||||||||| ||| | |||||||||| Sbjct 2028 CAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACAAT 2087 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || || ||||| || || |||| Sbjct 2088 ATCCAGAAAGAGTCAACTCTTCA 2110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443923556926080