Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq173968 138 2e-26 seq203223 116 5e-20 seq82795 107 3e-17 seq87083 100 4e-15 seq29178 95.1 2e-13 >seq173968 Length=7941 Score = 138 bits (152), Expect = 2e-26 Identities = 182/250 (73%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 |||||||||||| || ||||||||||| || ||||||||||||||||| ||||||||| Sbjct 7694 TGGGAAATGTAC-AAGAAGGCCGAGGCGTCGTTTTGGACCGCCGAGGAAGTCGACCTCTC 7752 Query 1455839 CGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGT 1455898 ||| | || |||| || | | ||||||| || ||||||| || | Sbjct 7753 TCAGGACCAGCGTCAATGGGAAAACCTCACCAGCGACGAGAAGCACTTCATCAGTCATAT 7812 Query 1455899 CCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTA 1455958 ||| ||||| || |||||| || || ||||| ||| ||||| ||||| | || | Sbjct 7813 CCTTGCCTTCTT-CGCCGCTTCTGACGGAATCGTCCTCGAAAACCTCGCCGGAAGGTTCA 7871 Query 1455959 TGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAA 1456018 |||| |||||||| | | ||||| ||| || || || || ||||| ||||| |||| Sbjct 7872 TGAAGGAGGTCCAGGTCGCCGAGGCTCGTGCCTTCTATGGATTTCAGATTGCCATTGAAA 7931 Query 1456019 ACATCCACTC 1456028 |||||||||| Sbjct 7932 ACATCCACTC 7941 >seq203223 Length=1923 Score = 116 bits (128), Expect = 5e-20 Identities = 189/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 1456005 GATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAA 1456064 ||| ||||| ||||||||||||||||| | ||| || || | || | || |||| Sbjct 1 GATTGCCATTGAAAACATCCACTCTGAGATGTACAGTCTGTTGTTAGAATCGTATATCAA 60 Query 1456065 GGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAA 1456124 ||| || ||||| || ||||||| ||| ||||| || | || | ||| ||| Sbjct 61 GGATCCAAAGGAGAAAAACAGGCTCTTTCACGCAATCGATACCATCCCCTGTGTGGCGAA 120 Query 1456125 AAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA-CTTTGCCGAGCG 1456183 || ||| | ||||| | |||||| || ||| ||| | ||||||||| || Sbjct 121 GAAAGCCCAGTGGGCTCTCCGATGGATC------GACGGCTCCGAAACCTTTGCCGAACG 174 Query 1456184 GCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTT 1456242 || ||| || ||| |||| || |||||||| ||||| || || |||||| | || || Sbjct 175 CCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTGCTCGATATT 234 Query 1456243 TTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||||| ||||| ||||| |||||||| || Sbjct 235 CTGGCTAAAGAAACGCGGTCTCATGCCGGG 264 >seq82795 Length=1924 Score = 107 bits (118), Expect = 3e-17 Identities = 187/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 1456005 GATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAA 1456064 ||| ||||| |||||||||||||| || | ||| || || | || | || |||| Sbjct 1 GATTGCCATTGAAAACATCCACTCCGAGATGTACAGTCTGTTGTTAGAATCGTATATCAA 60 Query 1456065 GGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAA 1456124 ||| || ||||| || ||||||| ||| ||||| || | || | ||| ||| Sbjct 61 GGATCCAAAGGAGAAAAACAGGCTCTTTCACGCAATCGATACCATCCCCTGTGTGGCGAA 120 Query 1456125 AAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA-CTTTGCCGAGCG 1456183 || ||| | ||||| | |||||| || ||| ||| | ||||||||| || Sbjct 121 GAAAGCCCAGTGGGCTCTCCGATGGATC------GACGGCTCCGAAACCTTTGCCGAACG 174 Query 1456184 GCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTT 1456242 || ||| || ||| |||| || ||||| || ||||| || || |||||| | || || Sbjct 175 CCTGCTCGCATTCGCCTGCGTGGAAGGCATTTTCTTCTCCGGAAGCTTCTGCTCGATATT 234 Query 1456243 TTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||||| ||||| ||||| |||||||| || Sbjct 235 CTGGCTAAAGAAACGCGGTCTCATGCCGGG 264 >seq87083 Length=8042 Score = 100 bits (110), Expect = 4e-15 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| || || || | | ||| ||| |||| |||| || Sbjct 292 ATCTTCAAGGTGCTGAAGCAGGTCCATCCT-GA--CATCGGG--ATC-TCCAGCAAGGCC 239 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||| || |||||||||| |||| | | | ||||| Sbjct 238 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAACTTGCCCAGGAGGCATCG 179 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||||||||| ||||||| |||||| | || |||||||||||||| || Sbjct 178 CGGCTGGCGCGCTACAACAAGAAGCCGACGATCACTTCTCGGGAGATCCAGACCGCAGTA 119 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | | | |||||| |||||| |||||| || || ||||| |||| Sbjct 118 CGATTGGTACTTCCCGGCGAGTTGGCCAAGCACGCTGTTTCGGAGGGAACCA 67 Score = 89.7 bits (98), Expect = 7e-12 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACC-GCATCG 725016 ||||| |||| ||||| |||||||||| || |||||||||| |||| || | Sbjct 4671 CTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGC 4612 Query 725017 GCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 || ||||| || |||||||| | ||||||| |||||| | || |||| Sbjct 4611 TCAG-GAGGCATCGCGGCTGGCGCGTTACAACAAGAAGCCGACGATCACTTCTCGGGAGA 4553 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 ||||||| ||||| || || | | | |||||| |||||| ||||||||| || |||| Sbjct 4552 TCCAGACGGCCGTCCGATTGGTGCTTCCCGGCGAGTTGGCCAAGCACGCCGTTTCAGAGG 4493 Query 725137 GCACCA 725142 |||||| Sbjct 4492 GCACCA 4487 >seq29178 Length=4905 Score = 95.1 bits (104), Expect = 2e-13 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACC-GCATCG 725016 ||||| |||| ||||| |||||||||| || |||||||||| |||| || | Sbjct 3480 CTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGC 3421 Query 725017 GCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 || ||||| | || |||||||| | ||||||| |||||| | || |||| Sbjct 3420 TCAG-GAGGCAGCGCGGCTGGCGCGTTACAACAAGAAGCCGACGATCACTTCTCGGGAGA 3362 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 ||||||| ||||| || || | | | |||||| |||||| ||||||||| || |||| Sbjct 3361 TCCAGACGGCCGTCCGATTGGTGCTTCCCGGCGAGTTGGCCAAGCACGCCGTTTCAGAGG 3302 Query 725137 GCACCA 725142 |||||| Sbjct 3301 GCACCA 3296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7157513489403928