Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq43099 149 7e-31 seq129087 138 1e-27 seq151040 82.4 9e-11 >seq43099 Length=3685 Score = 149 bits (164), Expect = 7e-31 Identities = 256/372 (69%), Gaps = 0/372 (0%) Strand=Plus/Minus Query 160005 TGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGAC 160064 ||||||||| || ||||| |||||| ||| ||| | || ||| || | || || Sbjct 2302 TGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAAC 2243 Query 160065 TTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAA 160124 |||||| ||||| | || ||||| || | || | ||||| | |||| ||||| || Sbjct 2242 TTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAA 2183 Query 160125 CAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTC 160184 || | ||| | ||||| || |||| || || || | | | |||||| | Sbjct 2182 TAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGC 2123 Query 160185 TATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGAT 160244 | |||| | ||||||| ||| | ||| | |||| || | ||||| || || || Sbjct 2122 TCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAAT 2063 Query 160245 TAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGA 160304 | || ||||||||||||||||||| ||||||||||| || || || || ||||| Sbjct 2062 CCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGA 2003 Query 160305 AGGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGA 160364 ||| ||| | ||||||||||| | ||||| || |||||||| |||| ||| |||| Sbjct 2002 AGGTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGA 1943 Query 160365 GGAAGTACTACC 160376 ||| || |||| Sbjct 1942 GGAGGTTATACC 1931 >seq129087 Length=3483 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 159700 CTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCGTCTAGTTGGTATCCGTCCTTAC 159759 || |||||||| ||| |||| ||||| ||| ||||||| | ||| | || |||||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 159760 AATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCA 159819 ||||| || || ||||||| ||| |||| ||||||||| |||||||| || |||||| Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 159820 CTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTC 159879 | ||||||||| ||| ||| || |||||||| || |||| | | || ||| ||||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 159880 CTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATG 159933 || | || || || || | || |||| | ||||| || |||||| || Sbjct 425 ATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq151040 Length=1315 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 160271 AGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTG 160330 |||| || | |||||| || || | || || ||||| ||| | ||||||||||| | Sbjct 1219 AGACTTTTTGCACCAAAAATATTATCTTAAACCAAGGAATTCATACTTGGATGGCAATTC 1160 Query 160331 CTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTAC 160375 |||||||| ||||||||| |||| |||||| ||||||| |||| Sbjct 1159 AAGATCAACCTCATGAAAACATTATATTCCCTAAGGAAGTTCTAC 1115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571516631716800