Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq127763 111 2e-19 seq43099 86.0 7e-12 seq161624 84.2 2e-11 >seq127763 Length=4742 Score = 111 bits (122), Expect = 2e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| ||||| |||| || || ||||| ||||| | |||||||| | ||||| Sbjct 1741 TACATATTAGACTCAGCTGAGGATGCAGGTGTTGAGCTACCTTATTCTTGCAGGGCTGGG 1800 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || |||||| |||||||||| |||| |||||||| |||| ||||||||||| ||| Sbjct 1801 GCATGCTCTACCTGTGCAGGGCAAATGGTTTCAGGTTCAGTGGACCAGTCTGATGGATCC 1860 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 ||| | ||||| | ||||| || || | | | || || || |||| || ||| Sbjct 1861 TTCCTTGATGACAAGCAGATGGAGAAGGGTTATTTGCTAACTTGCATTTCATACCCAACT 1920 Query 161306 AGCGATTGTGTGATTCAAACT 161326 |||||||||||||| ||| Sbjct 1921 TCAGATTGTGTGATTCACACT 1941 >seq43099 Length=3685 Score = 86.0 bits (94), Expect = 7e-12 Identities = 206/312 (66%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 162369 GAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTT 162428 || |||||||| ||||| | || ||||| || | || | ||||| | ||| ||| Sbjct 2247 GAAACTTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTT 2188 Query 162429 TCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACA 162488 || || || | ||| | ||||| || |||| || || || | | | |||||| Sbjct 2187 TCCAATAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATG 2128 Query 162489 TCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAG 162548 || |||| | ||||||| ||||| ||| | |||| || | ||||| || Sbjct 2127 AGTGCTCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAA 2068 Query 162549 GAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTC 162608 || ||| | || ||||||||||| ||||| | |||||||| || || ||||| | Sbjct 2067 GAAATCCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTA 2008 Query 162609 AATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTC 162668 |||||||| | | | | ||| | ||| | || || || |||| ||| |||| ||| Sbjct 2007 AATGAAGGTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTC 1948 Query 162669 CCAGAAGAAGTT 162680 | || || ||| Sbjct 1947 TCTGAGGAGGTT 1936 >seq161624 Length=13970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 160298 TGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGC 160357 ||||||||||||| || || | | ||||||||| ||||| ||| |||||||| | Sbjct 9739 TGAGTGGGAACTTAGATTTTGTCTGGATATGCGCCCTTGGATTGTTGTTGCATATTCAAC 9798 Query 160358 TCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTC 160417 || || | | | ||| ||| ||| | | | | |||||||| || || Sbjct 9799 TCTTGTTGTAGTTACTACTGTTGTTTTCTTGATCAACCTAATCGGTCAATAAAACTTTTC 9858 Query 160418 CGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGA 160477 || ||||||||| || | | || |||||| |||| ||| |||||||||| || || Sbjct 9859 TAATTGTATGCCTCTAGGACTTTTTGATACTTTCAACTTCATAATTGTATTCCAGGCTGA 9918 Query 160478 ACACAATATCCTTATGCATCCGTTCCACA 160506 ||| ||||||||||| || ||||||| Sbjct 9919 GTACATCATCCTTATGCACCCATTCCACA 9947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558032196752800