Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq43099 131 2e-25 seq159223 91.5 2e-13 seq129087 89.7 6e-13 seq203825 82.4 9e-11 >seq43099 Length=3685 Score = 131 bits (144), Expect = 2e-25 Identities = 252/372 (68%), Gaps = 0/372 (0%) Strand=Plus/Minus Query 182987 TGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGAC 183046 ||||||||| || ||||| |||||| || || || | ||| | |||| || Sbjct 2302 TGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAAC 2243 Query 183047 CTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAA 183106 ||||| ||||| | || || ||||||| || ||||||| |||||| ||| ||| Sbjct 2242 TTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAA 2183 Query 183107 TAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTC 183166 ||| ||||||| || |||||| |||| || || || | | | | ||| | | | Sbjct 2182 TAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGC 2123 Query 183167 TATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGAT 183226 | |||| | |||| || ||||| || | |||| ||| | || || ||||| || Sbjct 2122 TCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAAT 2063 Query 183227 TAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGA 183286 | || ||||||||||| || |||| |||||||| || || || || | ||||| Sbjct 2062 CCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGA 2003 Query 183287 AGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGA 183346 ||| | | | ||||| ||||| | ||||| || |||||||| | || ||| |||| Sbjct 2002 AGGTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGA 1943 Query 183347 AGAAGTTCTACC 183358 || ||| |||| Sbjct 1942 GGAGGTTATACC 1931 >seq159223 Length=5599 Score = 91.5 bits (100), Expect = 2e-13 Identities = 262/397 (66%), Gaps = 21/397 (5%) Strand=Plus/Minus Query 182900 CCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCT---CAGT--GCT 182954 ||| || |||||||||||||||| | |||| | ||||| | | || || Sbjct 3444 CCCATTTCATATGATGGGAGTTGTCAATGTACTAG-----GCACTAATTTGCCGTACTCT 3390 Query 182955 ATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACA--- 183011 || ||||||| | |||||| |||| |||| ||||||||| || ||||| || Sbjct 3389 ATTCATGGTGCTATAGTAGAAAATAAGTTGTTTGAAGATGGTGATGGTGCAAATTCATTC 3330 Query 183012 ----TTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAA 183067 ||| || || || | ||||| || || || ||||| || ||| || Sbjct 3329 TAGCTTTTAAATTTTTAATCCAACTCATAGTGAAGAAACTTATTCAATAGTTTTCATTAA 3270 Query 183068 TCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAAT-AAGCGTTGGTTGCACTTCT 183126 |||||||||| ||||||||| || |||| ||| |||| || |||||||| | || | Sbjct 3269 CCGTTTTTGGTTCCAAATCTTCAGGATTGCTTTTTCCAATAAATCGTTGGTTATATTTTT 3210 Query 183127 TTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTG 183186 ||||||||||||| || | | | | | ||| | | || ||||| | ||| || Sbjct 3209 TTATGTTGTTTGTACCAGCAACCGATTTATGGATGAGTGCTCTTGGGGTAGTTGATCTAT 3150 Query 183187 CTCTTAATCTTCGTGCTTATGATTTTGTGAGTC-AAGAGATTAGAGCAGCAGAAGATCCT 183245 |||| || | | ||| ||||| ||| | || |||| || | |||| ||||| | Sbjct 3149 CTCTAAAATTACATGCCTATGACTTTATTTTTCAAAGAAATCTGTATAGCAAAAGATTGT 3090 Query 183246 GAGTTCGAGACGTTCTACA-CAAAGAACATC-CTTCT 183280 | | ||||| || |||| |||| | | || ||||| Sbjct 3089 AAATATGAGACTTTTTACATCAAAAATCTTCTCTTCT 3053 >seq129087 Length=3483 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 182682 CTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGAATCAGACCTTAC 182741 || || ||||||||| | | ||||| ||||||||||| | || | | |||||||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 182742 AATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCT 182801 ||||| || || || |||| ||| |||| ||| || || ||| ||||| || ||||| Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 182802 TTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTC 182861 || || ||||| |||| | | | ||| |||||||| | | || || | ||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 182862 CTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATG 182915 || | || || || || | || ||||| | ||||| || |||||| || Sbjct 425 ATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq203825 Length=6240 Score = 82.4 bits (90), Expect = 9e-11 Identities = 189/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 182860 TCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAG 182919 |||| || ||| | ||| |||| | || |||||| | ||| | || |||| ||||||| Sbjct 2148 TCCTCTTTTTC--TAAGGATTTC-ATAATTGGACATTGAACTCATTTTATATTATGGGAG 2092 Query 182920 TTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATA 182979 ||| | | || | |||| | ||| | | ||| ||||||| || | | |||| Sbjct 2091 TTGTCGATGTATTAGGTGTTACTTTGCCCGGCAATATTCATGGTGATACCACAAA-AATA 2033 Query 182980 CCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGG 183039 |||| | | |||||| || | || | |||||| ||| || || | ||| | | Sbjct 2032 CCTTATTTTAAGATGATGATGA--CATAGACATTTTAAGTTTTTAATCCAACTTAAGGTA 1975 Query 183040 AGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGT 183099 | || ||||| ||||| | | | ||||||| || | |||||||| |||| | | Sbjct 1974 AAGAAGTTTATTCAATGGTCATCACTATCCGTTTTTTATCCCTAATCTTCGAGGTTACTT 1915 Query 183100 TTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGT 183139 || |||||| |||| || || ||||||||||| ||||| Sbjct 1914 TTTCTAATAAGTGTTGATTACATTTCTTTATGTTATTTGT 1875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613000817672320