Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq43099 96.9 4e-15 seq203261 84.2 3e-11 seq129087 84.2 3e-11 >seq43099 Length=3685 Score = 96.9 bits (106), Expect = 4e-15 Identities = 217/324 (67%), Gaps = 4/324 (1%) Strand=Plus/Minus Query 179849 TGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGAC--ACAGGAAGAAGAG 179906 ||||||||| || |||||||| ||| ||| ||| || | || | | ||| || Sbjct 2302 TGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAG--GAA 2245 Query 179907 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCT 179966 |||||||| ||||| | || ||||| || | || | ||||| | ||| ||||| Sbjct 2244 ACTTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCC 2185 Query 179967 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCC 180026 || || | ||| | ||||| || |||| || || || | | | |||||| Sbjct 2184 AATAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGT 2125 Query 180027 TCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAG 180086 || |||| | ||||||| ||||| ||| | |||| || | ||||| || || Sbjct 2124 GCTCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAA 2065 Query 180087 ATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAAT 180146 ||| | || |||||||| || ||||||| ||||||||||| || ||||| | ||| Sbjct 2064 ATCCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAAT 2005 Query 180147 GAAGGACTACGTGCATGGTTGGCA 180170 ||||| | | | | ||| ||||| Sbjct 2004 GAAGGTATTCATACTTGGATGGCA 1981 >seq203261 Length=8816 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/169 (72%), Gaps = 10/169 (6%) Strand=Plus/Minus Query 178320 CTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTG 178379 || || || |||||||| ||||||| |||| |||| ||| |||||||| || Sbjct 1354 CTAGGAATATCTGGTACCTTCAACTTCATGATTGTGTTCG--------CACAACATCCTT 1303 Query 178380 ATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCA 178439 |||||| | ||||| ||||| | | | |||||||| ||||| || ||||||| Sbjct 1302 ATGCACTCATTCCATATGTTAGACATAATTGTTGTATTCGACGGTTCCCTATTCAGTGTT 1243 Query 178440 ATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAA 178488 ||||||||||| ||| | || | || |||| ||| ||| |||| ||| Sbjct 1242 ATGCACGGTTCCTTGATAAC-TTGTCTTTCGTACGTCAAA-GACTAAAA 1196 >seq129087 Length=3483 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 179544 CTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGTATCAGACCTTAC 179603 || || ||||||||| | | ||||| ||||||||||| | || | |||||||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 179604 AATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCT 179663 ||||| || || || |||| ||| |||| ||| || || ||| ||||| || ||||| Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 179664 TTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTC 179723 || || ||||| |||| | | | ||| |||||||| | | || || | ||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 179724 TTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATG 179777 |||| || || || || | || |||| | ||||| || |||||| || Sbjct 425 ATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604415461446720