Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq129087 105 7e-18 >seq129087 Length=3483 Score = 105 bits (116), Expect = 7e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 160220 CTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTA 160278 ||||| || |||||| | ||||| || ||||| || || | | || | | || ||||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAAT-TGCGACCTTA 303 Query 160279 CAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCC 160338 |||||| || || ||||||| ||| |||| ||| ||||| |||||||| || || || Sbjct 304 CAATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCC 363 Query 160339 ATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATT 160398 ||| |||||||| ||||| | | | || ||||| || | | | || ||| |||| Sbjct 364 ATTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATT 423 Query 160399 CCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATG 160453 | || | || ||||| |||| || |||| | ||||| || |||||| || Sbjct 424 CATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551020290571520