Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq43099 125 9e-24 seq129087 116 5e-21 seq161624 89.7 6e-13 >seq43099 Length=3685 Score = 125 bits (138), Expect = 9e-24 Identities = 251/372 (67%), Gaps = 0/372 (0%) Strand=Plus/Minus Query 180647 TGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAAC 180706 ||||||||| || ||||| || ||| ||| ||| || |||| || ||||||| Sbjct 2302 TGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAAC 2243 Query 180707 TTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAA 180766 ||| || ||||| | || ||||| || | || | ||||| | ||| ||||| || Sbjct 2242 TTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAA 2183 Query 180767 CAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTC 180826 || | ||| | ||||| || |||| || || || | | | |||||| | Sbjct 2182 TAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGC 2123 Query 180827 TATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 180886 | |||| | ||||||| ||||| ||| | |||| || | ||||| ||||| || Sbjct 2122 TCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAAT 2063 Query 180887 CAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGA 180946 | | || ||||||||||| || |||| ||||||||||| || || || || ||||| Sbjct 2062 CCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGA 2003 Query 180947 AGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGA 181006 ||| | | | | ||| ||||| | ||||| || | |||||| | || ||| |||| Sbjct 2002 AGGTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGA 1943 Query 181007 AGAAGTTCTACC 181018 || ||| |||| Sbjct 1942 GGAGGTTATACC 1931 >seq129087 Length=3483 Score = 116 bits (128), Expect = 5e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 180342 CTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTAC 180401 ||||| || || ||| |||| || || ||||| || || || || | || |||||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 180402 AATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCA 180461 ||||| || |||||||||| ||| || | ||| ||||| ||||| || || || ||| Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 180462 CTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTC 180521 | |||||||| ||||| ||| || || |||||| |||| | | || ||| ||||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 180522 CTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATG 180575 | |||||| || || || | || |||| | ||||| || |||||| || Sbjct 425 ATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq161624 Length=13970 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 179199 TGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGC 179258 ||||||||||||| | |||| | |||||| || ||||| ||||||||| || | Sbjct 9739 TGAGTGGGAACTTAGATTTTGTCTGGATATGCGCCCTTGGATTGTTGTTGCATATTCAAC 9798 Query 179259 ACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTC 179318 | || | | | | | || || ||| | || | | |||||||| || || Sbjct 9799 TCTTGTTGTAGTTACTACTGTTGTTTTCTTGATCAACCTAATCGGTCAATAAAACTTTTC 9858 Query 179319 TGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGA 179378 | || ||||||||| || | | || |||||| |||| ||| |||||||||| || || Sbjct 9859 TAATTGTATGCCTCTAGGACTTTTTGATACTTTCAACTTCATAATTGTATTCCAGGCTGA 9918 Query 179379 ACACAACATCCTTATGCACCCGTTCCA 179405 ||| ||||||||||||||| ||||| Sbjct 9919 GTACATCATCCTTATGCACCCATTCCA 9945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608724097470720