Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq74520 141 1e-28 seq203223 118 1e-21 >seq74520 Length=9548 Score = 141 bits (156), Expect = 1e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | |||||||| ||| | || | ||||| |||| ||| || Sbjct 3614 TCCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCC 3673 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||||||| ||||||||||||| | || ||||| ||| || ||| Sbjct 3674 ATTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGA 3733 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || || ||| | |||||| || | ||||||||||| Sbjct 3734 AACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATAT 3793 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || || ||||||||| ||||| || ||| || |||||| Sbjct 3794 TCCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 3836 >seq203223 Length=1923 Score = 118 bits (130), Expect = 1e-21 Identities = 230/333 (69%), Gaps = 10/333 (3%) Strand=Plus/Minus Query 39613 TAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGT 39672 |||||| |||||||| || |||| |||||| |||| ||||| || || || || || Sbjct 328 TAAGCACGCGAAGTCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTCGAGAAAGT 269 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAA 39731 | ||| ||||| ||||| || || || ||||| ||||| | |||| ||| | || || | Sbjct 268 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCG-AGCAGAAGCTTCCGGAGA 210 Query 39732 AGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT--GTATCATT 39789 ||||||||||||| || || ||||| | || | || | | || | | | Sbjct 209 AGAAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGC--C 152 Query 39790 ATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGC 39849 | ||||| | ||||| | ||||||||| ||||| || || || || || || Sbjct 151 GTCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGC 92 Query 39850 ATTAAAGAGATAATGTTTTTCATCACT--ATCTTTAACATATGTATCTATTAACAGACTA 39907 | |||||| |||||||| | | ||| || | ||| | |||| |||||||| Sbjct 91 GTGAAAGAG--CCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTG 34 Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATC 39940 ||||| || || |||||||||||||| || ||| Sbjct 33 TACATCTCAGAGTGGATGTTTTCAATGGCAATC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685101852056160