Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq82795 123 2e-23 seq203223 109 4e-19 >seq82795 Length=1924 Score = 123 bits (136), Expect = 2e-23 Identities = 228/329 (69%), Gaps = 4/329 (1%) Strand=Plus/Plus Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAA 44017 |||||||| ||||| || || || || ||||||||||| || |||| |||| ||||| Sbjct 2 ATTGCCATTGAAAACATCCACTCCGAGATGTACAGTCTGTTGTTAGAATCGTATATCAAG 61 Query 44018 GATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACA 44076 ||| | ||||| | | | ||| | || || || || | || || | | | Sbjct 62 GATCCAAAGGAGAAAAACAGGCTCTTTCACGCAATCGATACCATCCCCTGTGTGGCGA-A 120 Query 44077 TAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGT 44136 ||||| | ||||| || |||||| | || | |||| ||||| || | Sbjct 121 GAAAGCCCAGTGGGCTCTCCGATGGATCGACGGCTCCGAAACCTTTGCCGAACGCCTGCT 180 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGT 44195 ||| || || ||||||||||||||||| || || | | | ||| | ||||| ||| Sbjct 181 CGCATTCGCCTGCGTGGAAGGCATTTTCTTCTCCGGAAGCTTCTGC-TCGATATTCTGGC 239 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATG 44255 |||||||||| ||| | ||||| || || || || |||||||||||||| || || | Sbjct 240 TAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATGAGTTAATCTCGCGAGACG 299 Query 44256 AAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | |||||||| |||||||| || |||||| Sbjct 300 AGGGCTTACACTGCGATTTCGCGTGCTTG 328 >seq203223 Length=1923 Score = 109 bits (120), Expect = 4e-19 Identities = 224/328 (68%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 43958 ATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAA 44017 |||||||| ||||| || || || || ||||||||||| || |||| |||| ||||| Sbjct 2 ATTGCCATTGAAAACATCCACTCTGAGATGTACAGTCTGTTGTTAGAATCGTATATCAAG 61 Query 44018 GATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACA 44076 ||| | ||||| | | | ||| | || || || || | || || | | | Sbjct 62 GATCCAAAGGAGAAAAACAGGCTCTTTCACGCAATCGATACCATCCCCTGTGTGGCGA-A 120 Query 44077 TAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGT 44136 ||||| | ||||| || |||||| | || | |||| ||||| || | Sbjct 121 GAAAGCCCAGTGGGCTCTCCGATGGATCGACGGCTCCGAAACCTTTGCCGAACGCCTGCT 180 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGT 44195 ||| || || ||||||||||| ||||| || || | | | ||| | ||||| ||| Sbjct 181 CGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTGC-TCGATATTCTGGC 239 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATG 44255 |||||||||| ||| | ||||| || || || || || ||||||||||| || || | Sbjct 240 TAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCGAATGAGTTAATCTCGCGAGACG 299 Query 44256 AAGGCTTACATTGCGATTTTGCTTGCTT 44283 | |||||||| ||||| || || ||||| Sbjct 300 AGGGCTTACACTGCGACTTCGCGTGCTT 327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396436610316220