Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq45179 111 1e-19 seq83787 104 2e-17 seq73220 102 7e-17 seq2835 98.7 8e-16 seq138849 95.1 1e-14 seq121659 95.1 1e-14 seq56209 95.1 1e-14 >seq45179 Length=1454 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || |||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 330 CCACCACGCAGACGAAGCACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGCG 389 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 ||| || ||||||| ||||| ||||| ||| |||| || | ||| || ||||| || Sbjct 390 AGAGTTCGGC-CGTCTTCCAGCTGCTTACCTGCGAAAATCAGCCTCTGCTGGTCCGGTGG 448 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| ||||| |||||| ||||| | | || | ||||| | | ||| || Sbjct 449 AATGCCCTCCTTATCCTGGATCTTAGCTTTCACGTTGTCGATGGTGTCGGAGCTTTCGAC 508 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| || | || || ||||||||||| ||||| || ||||| Sbjct 509 CTCTAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACAAAAATCTGCAT 556 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || ||||| || |||||||| ||| Sbjct 786 CCTCCACGGAGACGGAGGACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCGGCA 845 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | ||| | ||||||||||| |||||||| | || || | ||| || ||||| || Sbjct 846 AGGGTTCGCCCATCTTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGA 905 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||||| ||| | | || | ||||| | | ||| ||| Sbjct 906 ATACCCTCCTTGTCCTGGATCTTGGCTTTAACATTGTCGATGGTGTCGGAGCTTTCGACT 965 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | || || || ||||| |||||||| || ||||| Sbjct 966 TCCAAAGTAATGGTCTTTCCTGTAAGAGTCTTCACAAATATCTGCAT 1012 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || ||||| || ||||||||||| Sbjct 558 CCTCCACGGAGACGGAGCACCAAGTGCAGAGTCGACTCTTTCTGGATATTGTAGTCAGCG 617 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||| ||||| ||||||||| | || || | ||| || ||||| || Sbjct 618 AGGGTTCGGCCATCTTCAAGCTGCTTACCGGCGAAGATCAGCCTCTGCTGGTCCGGTGGA 677 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| |||| | | || | ||||| | | ||| || Sbjct 678 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCGACC 737 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || || ||||||||||| || ||||| Sbjct 738 TCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 784 >seq83787 Length=2295 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | || || || || || || || || || || ||||||||| | Sbjct 1906 CCACCGCGGAGACGAAGCACTAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 1847 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| ||||| || |||||| | || || | ||| |||||||| || Sbjct 1846 AGAGTTCGACCGTCTTCAAGCTGCTTCCCGGCGAATATCAGCCTCTGCTGATCCGGTGGG 1787 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||||| || ||||||| || | | || | ||||| | | ||||| Sbjct 1786 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCCGAGCTCTCAACC 1727 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| ||||| | || || || || |||||||||||||| ||||| Sbjct 1726 TCTAGGGTTATTGTCTTTCCGGTAAGGGTTTTCACAAAGATCTGCAT 1680 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || |||||||| ||| | | | ||| | ||||||||||| || ||| Sbjct 2104 GTTGACTCTTTCTGGATATTGTAATCGGCAAGGGTTCGCCCATCTTCGAGCTGCTTGCCG 2045 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || ||||| || | |||||| || || ||||||| ||| Sbjct 2044 GCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTGGCTTTA 1985 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||| ||||| | ||| || | || || || |||||| Sbjct 1984 ACGTTGTCGATCGTGTCGGAGCTTTCGACTTCCAAAGTAATGGTCTTTCCTGTAAGAGTT 1925 Query 27231 TTCACAAAGATTTGCAT 27247 |||||||| || ||||| Sbjct 1924 TTCACAAATATCTGCAT 1908 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||||||||| |||||||| | || || | ||| || ||||| || | |||||| || Sbjct 2290 TCTTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTG 2231 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| ||| | | | || | ||||| | | ||| || || || || || Sbjct 2230 TCCTGGATCTTGGCTTTAACGTTGTCGATCGTGTCGGAGCTTTCGACCTCCAGGGTGATG 2171 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || ||||||||||| || ||||| Sbjct 2170 GTCTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 2136 >seq73220 Length=12354 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 |||| || | ||| || | ||||| || | ||||| || || || || |||||||| | Sbjct 7143 TGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCG 7202 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | |||| || | ||||| ||||||||||| || | ||||| | ||| || || || Sbjct 7203 CCAATGTC-CGACCATCTTCCAGCTGTTTACCCGCAAATATGAGCCTCTGCTGGTCTGGG 7261 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | |||||| || || ||| || ||||| | || | ||||||| ||| Sbjct 7262 GGAATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCA 7321 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || |||| ||| || || || || |||||||| |||||||| Sbjct 7322 ACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 7371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || ||||||||||| || || | | ||| | || || ||||| || || Sbjct 6491 GTAGATTCCTTCTGAATATTGTAATCTGCCAAGGTCCGCCCATCCTCTAGCTGCTTTCCA 6550 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| ||||| || || | |||||| || || ||||| ||| Sbjct 6551 GCAAATATGAGCCTCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGAATCTTTGCCTTC 6610 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| ||||| | | || || || || || || | ||| || ||||| || Sbjct 6611 ACATTATCTATGGTGTCAGAGCTCTCCACCTCAAGTGTGATCGTTTTACCTGTCAGGGTC 6670 Query 27231 TTCACAAAGATTTGCATAGCT 27251 |||||||| || |||||| || Sbjct 6671 TTCACAAAAATCTGCATACCT 6691 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || ||||||||||| || | ||| || | ||||| ||||| ||||| Sbjct 6947 GTTGATTCCTTCTGTATATTGTAGTCAGCCAAAGTT-CGACCATCTTCTAGCTGCTTACC 7005 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || || | ||| || ||||| || | ||| || || || || || ||| Sbjct 7006 AGCAAAGATTAGCCTCTGCTGGTCCGGTGGAATACCTTCCTTGTCCTGGAGTTTTGCTTT 7065 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | |||||||| |||||||| || || |||| ||| || || || || Sbjct 7066 CACATTGTCGATAGTGTCTGAACTCTCAACTTCAAGGGTGATAGTTTTACCAGTAAGGGT 7125 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||||| |||||||| Sbjct 7126 CTTCACAAATATTTGCAT 7143 >seq2835 Length=4848 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | | || |||| || |||||||| || Sbjct 780 GTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCA 721 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | || || || || |||||| || Sbjct 720 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTG 661 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| ||||| ||||| | || ||||| || ||| Sbjct 660 ACATTGTCGATGGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 601 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 600 TTCACAAAGATCTGCAT 584 >seq138849 Length=4585 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | | | || |||| || |||||||| || Sbjct 1427 GTTGACTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTGCCA 1368 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || |||||||| | || || || || ||||||| || Sbjct 1367 GCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 1308 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| ||||| ||||| | || ||||| || || Sbjct 1307 ACATTATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTC 1248 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 1247 TTCACGAAAATCTGCAT 1231 >seq121659 Length=2328 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | ||||| || | || || ||||||||||| ||||||||| Sbjct 91 CCTCCACGAAGACGGAGCACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCG 150 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||| ||||| ||||| ||| | || || | ||| || || || || Sbjct 151 AGGGTTCGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGA 210 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| |||| | | || | ||||| | | ||| || Sbjct 211 ATGCCCTCCTTATCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCGACC 270 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || || ||||||||||| || ||||| Sbjct 271 TCCAGGGTGATGGTCTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 317 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||| ||| | | | ||| | ||||||||||| || ||| Sbjct 349 GTTGACTCTTTCTGGATGTTGTAATCGGCAAGGGTTCGCCCATCTTCGAGCTGCTTGCCG 408 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || ||||| || | |||||| || || ||||||| ||| Sbjct 409 GCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTGGCTTTA 468 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||| ||||| | ||| || | || || || ||||| Sbjct 469 ACGTTGTCGATCGTGTCGGAGCTTTCGACTTCCAAAGTAATGGTCTTTCCTGTAAGAGTC 528 Query 27231 TTCACAAAGATTTGCAT 27247 |||||||| || ||||| Sbjct 529 TTCACAAATATCTGCAT 545 >seq56209 Length=7549 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | | | || |||| || |||||||| || Sbjct 2944 GTTGACTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTGCCA 2885 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || |||||||| | || || || || ||||||| || Sbjct 2884 GCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 2825 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| ||||| ||||| | || ||||| || || Sbjct 2824 ACATTATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTC 2765 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 2764 TTCACGAAAATCTGCAT 2748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423844534093728