Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq90559 113 6e-20 seq74520 100 4e-16 seq203223 95.1 2e-14 seq82795 95.1 2e-14 >seq90559 Length=17024 Score = 113 bits (124), Expect = 6e-20 Identities = 193/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || | | |||||||| ||||| |||||||||||||| | Sbjct 6082 AATCCATCCATCTCTGTCAACAGCTGATTAATGGTTTGCTCTCTCTCATCATTCCCACCT 6023 Query 11600 ATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | ||| || | | ||| | ||||| |||||||| ||||||||||| ||||| || Sbjct 6022 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 5963 Query 11660 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || |||||||| || | ||||| | || || || || || ||||| | Sbjct 5962 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 5908 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 | ||||||| || || || | | ||| | |||| || |||||| ||| || ||| | Sbjct 5907 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 5848 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | |||| ||| || |||||||| || || || || Sbjct 5847 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGG 5808 >seq74520 Length=9548 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || || ||||||||||||||||| ||||| || ||||| | |||||||| | Sbjct 2667 GGTAGAGCAATTGATGCCAAATTGCATACAGCAGTTTCATCAGCACTGGTGTACTCGATG 2726 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || ||||||||||| ||| ||||| || |||| ||||| ||| ||||| || || Sbjct 2727 ATCTCAGTACATAAGTTTGAAGATTTAATGGTACCCAGATTCTGTTGATTACTTTTTTTA 2786 Query 111350 TTGCACGCATCCT 111362 ||||| | ||||| Sbjct 2787 TTGCAAGAATCCT 2799 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| || |||||||| || || || | || ||| ||||| || || Sbjct 4018 TGGGGCCTTGGTGTTCCTGCATTGAAAAGAGTGGGCGAAGCATGAGTGAACCAACGCTGA 4077 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||||| | |||||| | | ||||||||||||| ||| ||| || || | | Sbjct 4078 GACATTAAATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATTCCAACAGAA 4137 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 112120 || | ||| ||||||| ||| || |||| | | | || | | | | || ||| Sbjct 4138 ACTCTCATCAACATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAG 4197 Query 112121 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | ||||||||||||||| |||||||||| || | ||| ||||||| Sbjct 4198 GACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCG 4244 >seq203223 Length=1923 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||| ||||| || || | ||||| ||||| || || ||||||||||| || ||| Sbjct 303 CCCTCGTCTCGCGAGATTAACTCATTCGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 244 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | |||||| |||||||||||||| || ||||| || || || Sbjct 243 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 184 Query 122797 GCAAAAAGGCGTTCGGCGAAGG 122818 || | ||||||||||| |||| Sbjct 183 GCGAGCAGGCGTTCGGCAAAGG 162 >seq82795 Length=1924 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||| ||||| || || | ||||||||||| || || ||||||||||| || ||| Sbjct 303 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 244 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | |||||| ||||||||||| || || ||||| || || || Sbjct 243 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAAATGCCTTCCACGCAGGCGAAT 184 Query 122797 GCAAAAAGGCGTTCGGCGAAGG 122818 || | ||||||||||| |||| Sbjct 183 GCGAGCAGGCGTTCGGCAAAGG 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626379930422400