Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq203223 105 8e-18 seq82795 96.9 4e-15 seq90559 84.2 3e-11 >seq203223 Length=1923 Score = 105 bits (116), Expect = 8e-18 Identities = 179/257 (70%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || ||||| | ||||||||||| | || ||||||||||| || ||| Sbjct 303 CCCTCGTCTCGCGAGATTAACTCATTCGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 244 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| |||| || || || ||||||||||| || ||||| || ||||| Sbjct 243 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 184 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || || || ||||||| ||| || | ||| | |||||||| Sbjct 183 GCGAGCAGGCGTTCGGCAAAGGTTTCGGA---GCCGTCGATCCATCGGAGAGCCCACTGG 127 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT--G 130271 || || ||| | | ||| |||| ||| | ||| || | |||||| ||| |||||| Sbjct 126 GCTTTCTTCGCCACACAGGGGATGGTATCGATTGCGTGAAAGAG--CCTGTTTTTCTCCT 69 Query 130272 ATGGATCTTTGATGTAC 130288 |||||| ||||| ||| Sbjct 68 TTGGATCCTTGATATAC 52 >seq82795 Length=1924 Score = 96.9 bits (106), Expect = 4e-15 Identities = 177/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || ||||| | ||||| ||||| | || ||||||||||| || ||| Sbjct 303 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 244 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| |||| || || || |||||||| || || ||||| || ||||| Sbjct 243 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAAATGCCTTCCACGCAGGCGAAT 184 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || || || ||||||| ||| || | ||| | |||||||| Sbjct 183 GCGAGCAGGCGTTCGGCAAAGGTTTCGGA---GCCGTCGATCCATCGGAGAGCCCACTGG 127 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT--G 130271 || || ||| | | ||| |||| ||| | ||| || | |||||| ||| |||||| Sbjct 126 GCTTTCTTCGCCACACAGGGGATGGTATCGATTGCGTGAAAGAG--CCTGTTTTTCTCCT 69 Query 130272 ATGGATCTTTGATGTAC 130288 |||||| ||||| ||| Sbjct 68 TTGGATCCTTGATATAC 52 >seq90559 Length=17024 Score = 84.2 bits (92), Expect = 3e-11 Identities = 187/281 (67%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || ||||||||||| ||||| || ||||| |||||||| || | ||||||||| || Sbjct 6082 AATCCATCCATCTCTGTCAACAGCTGATTAATGGTTTGCTCTCTCTCATCATTCCCACCT 6023 Query 14213 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 | ||| || | | ||| | || || || ||||||||||| ||||| || || || Sbjct 6022 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 5963 Query 14273 GG-----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 || |||||||| || ||||| | || || ||||| || || || | Sbjct 5962 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 5908 Query 14328 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCAC 14387 | ||||||| || || || | | ||| | || || ||| || || | ||| | Sbjct 5907 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 5848 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | || | |||| ||| || |||||||| || || || ||| Sbjct 5847 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGGT 5807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616808375284640