Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq203223 95.1 1e-14 seq74520 95.1 1e-14 seq90559 91.5 2e-13 seq82795 89.7 6e-13 >seq203223 Length=1923 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| || || || ||||||| || || || || || ||||||||||| || || Sbjct 162 CCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCT 221 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||| | || | ||||| ||||| || ||||||||||| || | ||||| || | Sbjct 222 TCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCGAATG 281 Query 94916 AGCTTATCTCTCGTGACGAGGG 94937 || | ||||| || |||||||| Sbjct 282 AGTTAATCTCGCGAGACGAGGG 303 >seq74520 Length=9548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCA-ACGGCT 104199 |||| |||| || ||| |||||| ||||||||||||||| | ||| || | | | | Sbjct 4241 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCCTACCTCCTGAAGATT 4182 Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 | | || ||| | |||| || ||| ||||||| ||| | || | | || ||||| Sbjct 4181 CAAGGGAAGGTTG-TAGAAAGGCCTCAGCACATGTTGATGAGAGTTTCTGTTGGAATTCA 4123 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319 ||| ||||||||||||| | | |||||| | ||||| || || ||||| Sbjct 4122 CAAGGATGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCAC 4063 Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || | || || || |||||||| || |||||||| |||||| Sbjct 4062 TCATGCTTCGCCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAA 4017 >seq90559 Length=17024 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/280 (67%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||||||||| || || ||||| ||||| || | ||||||||| | Sbjct 6082 AATCCATCCATCTCTGTCAACAGCTGATTAATGGTTTGCTCTCTCTCATCATTCCCACCT 6023 Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | ||| || | | ||| | ||||| |||||||| ||||||||||| || ||||| Sbjct 6022 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 5963 Query 9734 GG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 || |||||||| || ||||| | ||||| || | || ||||| | Sbjct 5962 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 5908 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||||| || || || | | ||| | || || ||| || ||| | ||| | Sbjct 5907 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 5848 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || | |||| ||| || || ||||| || || || || Sbjct 5847 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGG 5808 >seq82795 Length=1924 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| || || || ||||||| || || || || || || |||||||| || || Sbjct 162 CCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATTTTCTTCTCCGGAAGCT 221 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||| | || | ||||| ||||| || ||||||||||| || | ||||| || | Sbjct 222 TCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATG 281 Query 94916 AGCTTATCTCTCGTGACGAGGG 94937 || | ||||| || |||||||| Sbjct 282 AGTTAATCTCGCGAGACGAGGG 303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581726503302560