Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq203223 96.9 4e-15 seq82795 93.3 5e-14 >seq203223 Length=1923 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| |||| || | || || || ||||||||||| ||||||||||| || ||| Sbjct 164 TTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTC 223 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || | || |||||||| || || || || ||||||||||| | | |||||| || ||| Sbjct 224 TGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCGAATGAG 283 Query 60093 CTGATTTCCCGGGACGAGGGC 60113 | || || || ||||||||| Sbjct 284 TTAATCTCGCGAGACGAGGGC 304 >seq82795 Length=1924 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| |||| || | || || || ||||||||||| || |||||||| || ||| Sbjct 164 TTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATTTTCTTCTCCGGAAGCTTC 223 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || | || |||||||| || || || || ||||||||||| | | |||||| || ||| Sbjct 224 TGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATGAG 283 Query 60093 CTGATTTCCCGGGACGAGGGC 60113 | || || || ||||||||| Sbjct 284 TTAATCTCGCGAGACGAGGGC 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547081878087360