Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq49484 100 3e-16 seq19982 100 3e-16 seq72983 95.1 1e-14 seq26367 95.1 1e-14 seq192694 91.5 2e-13 seq105906 91.5 2e-13 seq37974 89.7 6e-13 seq208321 86.0 7e-12 seq168312 84.2 2e-11 seq168311 82.4 8e-11 >seq49484 Length=6935 Score = 100 bits (110), Expect = 3e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 6792 CTGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 6851 Query 79683 TTGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 6852 CTGAGCTACGAAAGCAA 6868 >seq19982 Length=8328 Score = 100 bits (110), Expect = 3e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 4803 CTGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 4744 Query 79683 TTGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 4743 CTGAGCTACGAAAGCAA 4727 >seq72983 Length=11024 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 314 TGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 255 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 254 TGAGCTACGAAAGC 241 >seq26367 Length=1939 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||| Sbjct 1620 GATTGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 1679 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||||||| Sbjct 1680 AACTGAGCTACGAAAGC 1696 >seq192694 Length=4503 Score = 91.5 bits (100), Expect = 2e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| || Sbjct 3002 AGAATGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 2943 Query 79680 CAATTGAGCTACGAAAGCAA 79699 ||| ||||||| |||||||| Sbjct 2942 CAACTGAGCTATGAAAGCAA 2923 >seq105906 Length=8729 Score = 91.5 bits (100), Expect = 2e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| || Sbjct 3079 AGAATGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 3020 Query 79680 CAATTGAGCTACGAAAGCAA 79699 ||| ||||||| |||||||| Sbjct 3019 CAACTGAGCTATGAAAGCAA 3000 >seq37974 Length=7624 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3967 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3908 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 3907 TGAGCTATGAAAGCAA 3892 >seq208321 Length=6185 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 2754 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2813 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 2814 TGAGCTATGAAAGC 2827 >seq168312 Length=12135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 8808 GAATGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 8867 Query 79681 AATTGAGCTACGAAAGCAAAAGG 79703 || ||||||| |||||| | ||| Sbjct 8868 AACTGAGCTATGAAAGCTACAGG 8890 >seq168311 Length=11911 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 7615 GAATGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 7674 Query 79681 AATTGAGCTACGAAAGC 79697 || ||||||| |||||| Sbjct 7675 AACTGAGCTATGAAAGC 7691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545776520951200