Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq118240 502 3e-137 seq75851 150 2e-31 seq66716 123 3e-23 seq193782 105 8e-18 seq27342 100 4e-16 seq129087 84.2 3e-11 >seq118240 Length=110069 Score = 502 bits (556), Expect = 3e-137 Identities = 807/1148 (70%), Gaps = 36/1148 (3%) Strand=Plus/Plus Query 185981 CTTGCACTTGCATCTCTAGGTGTTGTTACTAGTCTGGTGGCACAACATATGTACTCAATG 186040 ||||| || || ||| ||| ||| ||||| |||| || ||||| ||||| || | Sbjct 2 CTTGCTCTAGCCTCTTAAGGGGTTATTACTTCCTTGGTAGCTCAACACATGTATTCTTTA 61 Query 186041 CCATCCTATGCTTTCATAGCACAGGCGCATACTACGCAAGCTGCTCTATATGTTCATCAT 186100 || | ||||| ||||||||||| | |||||| |||||||| ||||| |||||| Sbjct 62 CCGGCTTATGCGTTCATAGCACAAGACTTTACTACTCAAGCTGCGTTATATACTCATCAC 121 Query 186101 CAATACATTGCA--ACTGCTCTGATGGTTGGTGCTTTTGCGCATGGAGCAATATTTTTTG 186158 |||||||| ||| | | || ||| || |||||||| |||||||| |||||||| Sbjct 122 CAATACATCGCAGGATTCATC--ATGACAGGAGCTTTTGCTCATGGAGCTATATTTTTCA 179 Query 186159 TTAGAGACTTTGATCCTACTCTGAATAAGGACAATGTTCTTGATAGAATGCTACAGCACA 186218 ||||||| | |||| | |||| |||| ||||| | | ||| || || | || | Sbjct 180 TTAGAGATTACAATCCGGAGCAGAATGAGGATAATGTATTGGCAAGA-TGTTAGACCATA 238 Query 186219 AAGAAGCAATTATAAGTCACTTAAGTTGGGTATCACTATTCCTTGGATTCCATACTTTAG 186278 ||||||| || ||| || ||| || || | | |||| ||| |||||||| || | Sbjct 239 AAGAAGCTATCATA--TCCATTA-GT--GGCAGC--TATT---TGGGTTCCATACCTTGG 288 Query 186279 GAATCTATGTCCATAATGATGTAGTAATGGCATTTGGTCATCCTGAGAGACAGATATTAA 186338 || | ||||| ||||||||||| | | || |||||| ||| |||| ||| || || | Sbjct 289 GACTTTATGTTCATAATGATGTCATGCTTGCGTTTGGTACTCCGGAGAAACAAATCTTGA 348 Query 186339 TTGAACCTATATTTGCACAGTGGATACAGGCAGCATCA-GGTAAGATGATGTATGGATTA 186397 |||||||||||||||| || |||||||| | || ||| ||||| | ||||| || Sbjct 349 TTGAACCTATATTTGCTCAATGGATACAATCTGC-TCACGGTAAAACTTCATATGGGTTT 407 Query 186398 AGTTTCTTACTATCTGATCCAAATAGTGCTGCAAGTCTA--------GCAGCAGAGAGTA 186449 | | | ||||| ||| | | | ||| || | | |||| | || Sbjct 408 GATGTACTTTTATCTTCAACAACTGGCCCGGCAT-TCAATGCGGGGCGAAGCATATGGT- 465 Query 186450 TGCCTGGTAATCATTACTGGATGAGTGCTATGAATGATCAAACAAACAGTCTGTTTCTAC 186509 ||||||| |||| | | |||| | ||||| | | || | || || Sbjct 466 TGCCTGG---------CTGGTTAAATGCTGTTAATGAGAATAGTAATTCATTATTCTTAA 516 Query 186510 CAATAGGACCTGCTGATTTATTAGTTCATCATGCTATTGCACTTGGATTACATACTACAA 186569 ||||||| |||| || || || ||||||||||||||||| || || |||||||| || | Sbjct 517 CAATAGGTCCTGGAGACTTCTTGGTTCATCATGCTATTGCTCTAGGTTTACATACAACTA 576 Query 186570 CTTTAATCCTAGTCAAGGGTGCATTAGATGCTAGAGGTTCAAAACTCATACCAGATAAGA 186629 | || ||| |||| || || || |||||||| | ||||| || | || |||||||| | Sbjct 577 CATTGATCTTAGTAAAAGGCGCTTTAGATGCACGTGGTTCCAAGTTAATGCCAGATAAAA 636 Query 186630 AAGATTTAGGATATTCATTCCCTTGTGATGGTCCAGGCAGAGGTGGTACTTGTGATAGTT 186689 | ||||| || ||| || ||||| |||||||| || |||| ||||||||||||| || Sbjct 637 AGGATTTCGGTTATAGTTTTCCTTGCGATGGTCCCGGACGAGGCGGTACTTGTGATATTT 696 Query 186690 CTGGTTGGGATGCTTTCTATCTCTCTGTGTTCTGGGCATTCAATACAATAGCATGGGCAG 186749 | | |||||| || || ||| | | || |||||| || ||||| || | ||||| Sbjct 697 CGGCTTGGGACGCATTTTATTTGGCAGTTTTCTGGATGTTAAATACTATTGGATGGGTTA 756 Query 186750 ATTTTTATTGGCACTGGAAGAACCTTGCTAGTTGGCAAGGTAATCAGGCACAATTCAATA 186809 ||| |||||||| |||||| || | | ||||| ||||| |||| || ||| Sbjct 757 CTTTATATTGGCATTGGAAGCACATCACATTATGGCAGGGTAACGTTTCACAGTTTAATG 816 Query 186810 CATCAGGAACATATCTTATGGGTTGGTTCAGAGATTATCTCTGGGCGAATAGTGCGCCTG 186869 ||| || ||| | ||||| ||||| ||||||||||| ||| || | | | Sbjct 817 AATCTTCCACTTATTTGATGGGATGGTTAAGAGATTATCTATGGTTAAACTCTTCACAAC 876 Query 186870 TAATCACAGGGTACACACCATTTGGTATGAATAATCTCTCTGTATGGGCATGGATGTTCT 186929 | |||| ||||| | || ||||||||||||| | | || || ||||| |||||||||| Sbjct 877 TTATCAATGGGTATAACCCTTTTGGTATGAATAGTTTATCAGTCTGGGCGTGGATGTTCT 936 Query 186930 TGTTTGGTCATTTAGTTTGGGCAACAGGATTTATGTTCCTTATTTCTTGGAGAGGTTATT 186989 | ||||| ||| | |||||||| || || ||||||||| | ||||| ||| | || |||| Sbjct 937 TATTTGGACATCTTGTTTGGGCTACTGGGTTTATGTTCTTAATTTCCTGGCGTGGATATT 996 Query 186990 GGCAAGAGTTAATTGAGACTCTTGCTTGGGCACATCAAAGAACTCCAATAGCAAATATAG 187049 |||| || || ||||| ||| | || ||||| ||| || | || || | || ||| | Sbjct 997 GGCAGGAATTGATTGAAACTTTAGCATGGGCTCATGAACGCACACCTTTGGCCAATTTGA 1056 Query 187050 CAGGTTGGAGAGATAAACCAGTGGCACTTTCTATTGTTCAAGCAAGACTAGTTGGTTTAT 187109 | |||||||||||||||||||| ||||| ||||| || |||||| | ||||| ||| Sbjct 1057 TTCGATGGAGAGATAAACCAGTGGCTCTTTCCATTGTGCAGGCAAGATTGGTTGGATTAG 1116 Query 187110 CACATTTT 187117 | || ||| Sbjct 1117 CCCACTTT 1124 >seq75851 Length=651 Score = 150 bits (166), Expect = 2e-31 Identities = 200/274 (73%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 188637 ACCTGTCACAGTTCAGTATCCTTATGAAAAATTAATACCCTCAGAGAGATATAGAGGGAG 188696 |||||| || |||| ||||| ||||||||||||||| | ||||| | | | || | Sbjct 380 ACCTGTAACTATTCAATATCCCTATGAAAAATTAATAACATCAGAACGTTTCCGCGGTCG 321 Query 188697 GATACACTATGAGTTTGATAAATGTATTGCTTGTGAAGTATGTGTAAGAGTTTGTCCTAT 188756 || || | || ||||||||||| |||||||||||||||||||| |||| |||||||| Sbjct 320 AATCCATTTCGAATTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGAGTATGTCCTAT 261 Query 188757 TAATTTACCTGTAGTTGATTGGGTAATG--AATAAACAAACTAAGAAGAAGGA--ACTTA 188812 || | || || ||||||||| | || || || | | || || || || ||| Sbjct 260 AGATCTGCCGGTTGTTGATTGGAAATTGGAAACTAATATTCGAA-AAAAACGATTGCTT- 203 Query 188813 GAAATTATTCAATTGACTTTGGTGCTTGCATTTTCTGTGGGAATTGTGTAGAATACTGTC 188872 ||||| ||||| ||||| ||| || || ||||| |||||||| || || |||| Sbjct 202 --AATTACAGTATTGATTTTGGAATTTGTATATTTTGTGGTAATTGTGTTGAGTATTGTC 145 Query 188873 CAACTAACTGTCTATCCATGACAGAAGAGTATGA 188906 |||| || ||| | || ||||| ||||| ||||| Sbjct 144 CAACAAATTGTTTGTCAATGACTGAAGAATATGA 111 >seq66716 Length=4511 Score = 123 bits (136), Expect = 3e-23 Identities = 194/277 (70%), Gaps = 3/277 (1%) Strand=Plus/Minus Query 184323 TAGGTACAGCAGACTTTATGATACATCACATACACGCTTTCCAGATTCATGTTTGTGTAT 184382 |||| || |||| ||| || |||||||||| || | || ||||||||| ||| Sbjct 3884 TAGGAACCACAGATTTTTTGGTACATCACATTCATACATTTACGATTCATGTGATGATAT 3825 Query 184383 TAATTCTTCTCAAGGGTGTTTTATACTCTAGAAACTCACAATTAATACCAGATAAGAGTA 184442 |||| || | || |||||| ||| || | | ||| || || ||| ||||| | | Sbjct 3824 TAATACTCCGAAAAGGTGTTCTATTTGCTTGTAGCTCTCATTTGGTACTGGATAAAGGAA 3765 Query 184443 AGTTAGGATTCAGATTCCCTTGTGATGGTCCTGGTAGAGGAGGCACTTGTCAGGTATCAG 184502 || | || || | ||||| ||||||| | ||| |||| || || ||||| | ||| Sbjct 3764 AGATTGGTTTTCGTTTCCCATGTGATGAACTTGGAAGAGAGGGTACATGTCAAATGTCAA 3705 Query 184503 GATGGGATCATGTATTCCTTGGTTTATTCTGGATGTATAATTGCATCTCTATAGTAATCT 184562 ||| |||| || ||| | | || |||||||||||||||| || | ||||||| | Sbjct 3704 CTTGGTATCACGTCTTCTTAAGGTTGTTCTGGATGTATAATTCAATTTTGGTAGTAATAT 3645 Query 184563 TCCACTTTAGTTGGAGAATGCA---AGATGTATGGGG 184596 |||| || | ||||| |||||| |||||| ||||| Sbjct 3644 TCCATTTCAATTGGAAAATGCATTCAGATGTTTGGGG 3608 >seq193782 Length=835 Score = 105 bits (116), Expect = 8e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 184799 ATAGAGTCTATTGCTTGGGCACATAACAAATTAAAACTTGCACCTACCATTCAACCAAGA 184858 || || || || | |||||| ||||| ||||||||| |||| ||| | | || || ||| Sbjct 823 ATTGAATCCATCGTTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCTACCCAGCCTAGA 764 Query 184859 GCAATGTCAATTACACAAGGACGTGCTGTTGGAGTTGCACACTTCTTACTTGGAGGTATT 184918 || || ||| ||||||||||||||| ||||| | || | | | || || || ||| Sbjct 763 GCCTTGAGCATTGTACAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATT 704 Query 184919 GCCACAACATGGGCATTCTTCTTTGC 184944 |||||||||||||| |||||||| || Sbjct 703 GCCACAACATGGGCGTTCTTCTTAGC 678 >seq27342 Length=591 Score = 100 bits (110), Expect = 4e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 186605 GGTTCAAAACTCATACCAGATAAGAAAGATTTAGGATATTCATTCCCTTGTGATGGTCCA 186664 ||||| || | || ||| |||| || ||||| || ||| || ||||| |||||||| Sbjct 8 GGTTCCAAGTTAATGCCATATAAAAAGGATTTTGGTTATAGTTTTCCTTGCGATGGTCCC 67 Query 186665 GGCAGAGGTGGTACTTGTGATAGTTCTGGTTGGGATGCTTTCTATCTCTCTGTGTTCTGG 186724 | ||||| |||||||||||| ||| |||||||| || || ||| | | | |||| | Sbjct 68 GAACGAGGTAGTACTTGTGATATTTCGGGTTGGGACGCATTTTATTTGACAATTTTCTAG 127 Query 186725 GCATTCAATACAATAGCATGGGCAGATTTTTATTGGCACTGGAAG 186769 ||| ||||| || | ||| | |||||||||||| |||||| Sbjct 128 ATATTAAATACCATTGGATGAGTTATTTTTTATTGGCATTGGAAG 172 >seq129087 Length=3483 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 191117 CTCATAGGATTCATGTTACGTCAGTTTGAAATTGCAGGATTGGTGGGTATTAGACCTTAC 191176 || ||||| |||||||||||||| || ||| |||| |||| || | |||||||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 191177 AATGCTCTTGCTTTTTCTGCTGTCATAGCAGTTTTCACAAGTGTATTCTTAATCTATCCA 191236 ||||| | || || |||||| || | ||||| ||||||| |||| |||||| Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 191237 CTTGGTCAGCACAGTTGGTTCTTTGCACCTTCATTTGGAGTTGCAGCAATCTTTAGATAT 191296 | |||||| ||||| ||| || ||| ||||| || | | | || ||| ||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 191297 ATTCTATTCATTCAAGGTTTCCACAATATTACACTCAACCCTTTCCACATGATG 191350 || || || ||||| || | ||| ||| | ||||| || || ||| || Sbjct 425 ATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629766199179040