Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq144336 84.2 2e-11 seq144321 84.2 2e-11 >seq144336 Length=10423 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 |||||||||||| ||||||| ||| || || | ||||| || ||||| |||||| Sbjct 5876 TGAGCAATCATGCATGTCAATAAAGCATAAGAAGCAATGTTAAATGGCACACCAAGACCC 5935 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || || || || ||| |||| ||| || || |||||||| || || ||||||||||| Sbjct 5936 ATATCAGCAGAGTGCTGATACATTTGACAGGATAGCTCCCCATTGGCTACATAAAACTG 5994 >seq144321 Length=9550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 118546 TGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCC 118605 || ||||||||| ||||||| ||| || || | ||||| || ||||| |||||| Sbjct 4969 TGGGCAATCATGCATGTCAATAAAGCATAAGAAGCAATGTTAAATGGCACACCAAGACCC 5028 Query 118606 ATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || || || || | ||| |||| ||| || || |||||||| || || ||||||||||| Sbjct 5029 ATATCAGCAGAGCGCTGATACATTTGACAGGATAGCTCCCCATTGGCTACATAAAACTG 5087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413413755602416