Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq73220 95.1 9e-15 seq121659 93.3 3e-14 seq83787 93.3 3e-14 >seq73220 Length=12354 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || || ||||| ||| ||| || |||| || || ||| | Sbjct 7599 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAAGTTGAGAGCTCA 7540 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| |||||| ||||| ||||| || ||| |||| || | Sbjct 7539 GACACCATTGATAAT--GTCAAAGCGAAAATCCAGGACAAGGAGGGTATTCCCCCAGACC 7482 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || | || || | || | ||| | ||||| | Sbjct 7481 AGCAGAGGCTTATATTTGCTGGTAAGCAGCTCGAGGATGGCCGGACATTGGCTGATTATA 7422 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| |||||| ||| | || |||||| | ||||| | |||||| Sbjct 7421 ACATCCAGAAAGAGTCCACCCTTCACTTGGTTCTCCGTTTAAGAGGCGGC 7372 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || || ||||| ||| |||||| |||| || || || | Sbjct 7371 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATTACCCTTGAAGTTGAGAGTTCA 7312 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| ||||| ||||| || ||| |||| || | Sbjct 7311 GACACCATCGATAAT--GTGAAAGCTAAAATCCAGGACAAGGAGGGTATTCCCCCAGACC 7254 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || ||||| |||| || | || | ||| | || |||| Sbjct 7253 AGCAGAGGCTCATATTTGCGGGTAAACAGCTGGAAGATGGTCGGACATTGGCGGACTACA 7194 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| || | || |||||| | |||||| | || ||| Sbjct 7193 ACATCCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGTTTGAGAGGTGGC 7144 >seq121659 Length=2328 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| |||||||| || || ||||| | || ||||||||| || Sbjct 545 ATGCAGATATTTGTGAAGACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCC 486 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| || ||| || || ||||| || ||| |||| ||| | Sbjct 485 GACACGATCGACAAC--GTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACC 428 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || |||||||| || || | || || | || | | | ||||||||| Sbjct 427 AGCAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACA 368 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| ||| | || |||| | ||| | ||||| || Sbjct 367 ACATCCAGAAAGAGTCAACTCTTCACCTGGTCCTCCGTCTTCGTGGAGG 319 >seq83787 Length=2295 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||||||||| || || ||||| | || ||||||||| || Sbjct 1908 ATGCAGATATTTGTGAAAACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCC 1967 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | ||||| |||| || ||| || || ||||| || ||| |||| ||| | Sbjct 1968 GACACGATCGACAA--CGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACC 2025 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || |||||||| || || | || || | || | | | ||||||||| Sbjct 2026 AGCAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACA 2085 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| |||||| ||| | || |||| | ||| | ||||| || Sbjct 2086 ATATCCAGAAAGAGTCAACTCTTCACCTGGTCCTCCGTCTTCGTGGAGG 2134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354949689009588