Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq73220 123 2e-23 seq45179 98.7 9e-16 seq76175 93.3 4e-14 seq83787 91.5 1e-13 seq2835 87.8 2e-12 seq121659 82.4 7e-11 >seq73220 Length=12354 Score = 123 bits (136), Expect = 2e-23 Identities = 177/247 (72%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||| |||||||| || | ||||| || || ||| |||||| | Sbjct 7358 ACAAAAATTTG--CATGCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCT 7415 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || |||||||| || | ||| || | || || ||||| || || ||||||||||| | Sbjct 7416 GGATGTTATAATCAGCCAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCC 7475 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||||||| | ||| | | ||| |||||| ||||||| ||||| | | | | Sbjct 7476 TCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTCGCTTTGACATTATCAATGG 7535 Query 39221 TATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 | || ||| ||| || || | |||||| ||||||| || || || || ||||| | Sbjct 7536 TGTCTGAGCT---CTCAACTTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAA 7592 Query 39278 TTTGCAT 39284 ||||||| Sbjct 7593 TTTGCAT 7599 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || ||| ||||| || || | ||||| || || || ||| || || || Sbjct 7132 AAATATTTGCATGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGAT 7191 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 || || || || | ||| || | || || |||||||| ||||||||||| || | ||| Sbjct 7192 GTTGTAGTCCGCCAATGTCCGACCATCTTCCAGCTGTTTACCCGCAAATATGAGCCTCTG 7251 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 |||||| | ||| | | ||| |||||| |||||| ||| | | | | || || Sbjct 7252 CTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTC 7311 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || | || ||| ||||||| || || || || ||||| |||||||| Sbjct 7312 TGAACTCTCAACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 7371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/243 (68%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || |||||||| || || | || | ||||| ||| ||||||||| || Sbjct 7816 AAATATTTGCATTCCTCCTCTCAAACGAAGTACAAGGTGTAGGGTGGACTCTTTTTGAAT 7875 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||||||||||| | || | | || || ||||| || || ||||| || | | || Sbjct 7876 GTTATAATCGGCCAAAGTCCTACCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTTTG 7935 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTAT 39223 |||||| | ||| | | ||| ||||| |||||| || | | | | | | | |||| Sbjct 7936 CTGGTCAGGGGGGATACCCTCCTTGTCTTGGATTTT-TGCCTTAACATTGTCAATGGTAT 7994 Query 39224 CGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 | ||| || || | || || ||||||| || || || ||||||||||| |||| Sbjct 7995 CAGAACTCTCAACTTCAAGAGTTATGGTTTTTCCAGTAAGGGTCTTAACAAAGATCTGCA 8054 Query 39284 TCT 39286 ||| Sbjct 8055 TCT 8057 >seq45179 Length=1454 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| || || | ||| ||| || || || || || ||||| |||||||| |||| || Sbjct 1031 CACTAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTTCGACCGTCTTC 1090 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||| || || ||||| || | |||||| | ||||||| | || ||||||||| Sbjct 1091 AAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGATCCGGTGGG-ATGCCCTCTTTGTCTT 1149 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| | | | ||| ||| ||| || || | || || | | Sbjct 1150 GGATCTTGGCCTTGACATTATCGATCGTGTCGGAGCTCTCAACCTCTAGGGTTATGGTCT 1209 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||| || || |||||||||||||| ||||||| Sbjct 1210 TTCCGGTAAGAGTTTTAACAAAGATCTGCATCT 1242 >seq76175 Length=8586 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || ||||| | Sbjct 2472 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCC 2413 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187 ||| || |||||||| || || || |||||||||||||||| ||||||| | || || | Sbjct 2412 GTCCTCCAGCTGTTTTCCAGCGAAGATAAGACGCTGCTGGTCCGGTGGG-ATGCCTTCCT 2354 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||||| ||| || |||| | | | || || ||| || || || | || | Sbjct 2353 TGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGACGATTCAACCTCTAGGGTTA 2294 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || ||||| || ||||| || ||||| |||||||| Sbjct 2293 TGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 2254 >seq83787 Length=2295 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || ||||| ||||||||||| ||||| | || || ||||| ||||| ||||| Sbjct 2099 CTCTTTCTGGATATTGTAATCGGCAAGGGTTCGCCCATCTTCGAGCTGCTTGCCGGCAAA 2040 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || | ||||||||| | || | | ||| |||||| ||| || | || | ||| Sbjct 2039 GATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTT-GGCTTTAACGT 1981 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| ||| || || |||| || || | ||||| || || ||||| | Sbjct 1980 TGTCGATCGTGTCGGAGCTTTCGACTTCCAAAGTAATGGTCTTTCCTGTAAGAGTTTTCA 1921 Query 39272 CAAAGATTTGCATC 39285 |||| || |||||| Sbjct 1920 CAAATATCTGCATC 1907 >seq2835 Length=4848 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || ||||| | Sbjct 799 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCC 740 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187 ||| || |||||||| || || || || ||||||||||||| ||||||| | || || | Sbjct 739 GTCCTCCAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATGCCTTCCT 681 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||||| ||| || |||| | | | || || || || || || | || | Sbjct 680 TGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGATGATTCAACCTCTAGGGTTA 621 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || ||||| || ||||| |||||||| |||||||| Sbjct 620 TGGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATCTT 581 >seq121659 Length=2328 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || ||||||||||| ||||| | || || ||||| ||||| ||||| Sbjct 354 CTCTTTCTGGATGTTGTAATCGGCAAGGGTTCGCCCATCTTCGAGCTGCTTGCCGGCAAA 413 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || | ||||||||| | || | | ||| |||||| ||| || | || | ||| Sbjct 414 GATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTT-GGCTTTAACGT 472 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| ||| || || |||| || || | ||||| || || || || | Sbjct 473 TGTCGATCGTGTCGGAGCTTTCGACTTCCAAAGTAATGGTCTTTCCTGTAAGAGTCTTCA 532 Query 39272 CAAAGATTTGCATC 39285 |||| || |||||| Sbjct 533 CAAATATCTGCATC 546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428443907351372