Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq173968 91.5 1e-13 >seq173968 Length=7941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 184/271 (68%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGA 4910 || || || ||||| || |||||||||||||| || ||| | ||| || | || || Sbjct 7941 GAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGCGACCTGG 7882 Query 4911 ACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAA 4970 || || || || ||| | | | ||||||| || || |||||| || || || Sbjct 7881 ACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAGCGGCGAAG 7822 Query 4971 AACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCT--TAAGTTTTTTCCAGTGGG 5028 || || | | |||| || |||| || ||||| ||| | || |||| ||| || Sbjct 7821 AAGGCAAGGATATGACTGATGAAGTGCTTCTCGTC--GCTGGTGAGGTTTTCCCATTGAC 7764 Query 5029 GCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGT 5088 || || | || | || ||||| || | |||||||||||||| || || || |||| Sbjct 7763 GCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCTCGGCCTTCTTGT 7704 Query 5089 ACATAGACCAAATATCAGGATACTGAATCGG 5119 |||| ||| | ||||| ||||||||||| Sbjct 7703 ACATTTCCCAGACTTCAGGGTACTGAATCGG 7673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425954309057852