Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq74520 105 9e-18 >seq74520 Length=9548 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||| |||||||| || || || || ||||||| | |||||| |||| |||| || Sbjct 3092 CTCCCTTTCATACTGGGTGTACAGATCCACAAATTCTTGACCCCAACAATCAGCCAAACC 3151 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || |||||| ||||| | || ||||| | |||| || ||||| || |||||| Sbjct 3152 TGGAGCTTCATTAGGGCAAAACAGGGACCAATGCCCATTACTCTGAACTCTTTCCATAAA 3211 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||||| ||| |||||| |||||||||||| | ||||| || || Sbjct 3212 GAGATCAGGTACCCAAAGAGCATAAAATAGATCTCGAGCCCTATGCTCCTC 3262 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| |||| ||| | || | | ||| |||| ||| || Sbjct 3615 CCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCCA 3674 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||||||| |||||||||||| | || ||||| ||| || || Sbjct 3675 TTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGAA 3734 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || ||| || | ||| || || | || || || || Sbjct 3735 ACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATATT 3794 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || ||||| ||||| ||||| || ||| || |||||| Sbjct 3795 CCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 3836 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||||||| || | || || || ||||| || ||||| | ||| | || || | Sbjct 4030 GTTCCTGCATTGAAAAGAGTGGGCGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 4089 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| ||||| || || ||||| | ||| |||||||| || | || | |||||| Sbjct 4090 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 4148 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||| ||||| || ||| | || |||| | ||| || | || | Sbjct 4149 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAGGACCTCTCAAG 4208 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || |||||| | || ||||| || Sbjct 4209 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCGGTCATAAATGAT 4256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692841438988160