Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq74520 131 2e-25 >seq74520 Length=9548 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||||| ||| | || | | ||| |||| |||||| Sbjct 3615 CCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCCA 3674 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||||||| |||||||||||| |||||||| ||| || ||| Sbjct 3675 TTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGAA 3734 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || || ||| | |||||| || | |||||||| || Sbjct 3735 ACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATATT 3794 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || ||||||||||| ||||| || ||| || |||||| Sbjct 3795 CCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 3836 Score = 100 bits (110), Expect = 4e-16 Identities = 118/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTG--TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 ||| |||||||| || |||| | | || ||||||| | |||||| |||| ||||| Sbjct 3092 CTCCCTTTCATACTGGGTGTACAGATCCA--CAAATTCTTGACCCCAACAATCAGCCAAA 3149 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || ||| |||||| || || | || ||||| | |||| || ||| | || |||| Sbjct 3150 CCTGGAGCTTCATTAGGGCAAAACAGGGACCAATGCCCATTACTCTGAACTCTTTCCATA 3209 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 ||||||||||||| ||| |||||| |||||||||||| Sbjct 3210 AAGAGATCAGGTACCCAAAGAGCATAAAATAGATCTCG 3247 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | || || || |||||||||||||| | ||| | || || | Sbjct 4030 GTTCCTGCATTGAAAAGAGTGGGCGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 4089 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||| | | || || || | ||| |||||||| |||| || | |||||| Sbjct 4090 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 4148 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||||||| ||| | || |||| | ||| || | || | Sbjct 4149 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAGGACCTCTCAAG 4208 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || |||||| | || ||||| || Sbjct 4209 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCGGTCATAAATGAT 4256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711058990414080