Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq129087 104 3e-17 seq43099 102 9e-17 seq161624 95.1 1e-14 seq203261 89.7 6e-13 >seq129087 Length=3483 Score = 104 bits (114), Expect = 3e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 165473 ACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTATTCGTCCTTA 165532 ||| |||||||||||| | || || || ||||| || ||| || | | || ||||| Sbjct 244 ACTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTA 303 Query 165533 CAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCC 165592 |||||| || || ||||||| ||| |||| ||| || ||| ||| || || || ||||| Sbjct 304 CAATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCC 363 Query 165593 TCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATT 165652 | || || || ||| ||| | || || || || | | | || || ||||| Sbjct 364 ATTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATT 423 Query 165653 CCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATG 165707 | ||||||| ||||||||| | ||| |||| |||| || ||||| ||| || Sbjct 424 CATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq43099 Length=3685 Score = 102 bits (112), Expect = 9e-17 Identities = 242/366 (66%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 165779 TGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAAC 165838 |||||||||||| ||||| || || || ||| || ||| | ||||||| Sbjct 2302 TGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAAC 2243 Query 165839 TTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAA 165898 |||||| ||||| | ||||||||||| | || | || ||| | ||| ||| ||| Sbjct 2242 TTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAA 2183 Query 165899 TAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTC 165958 ||| ||||| | || |||||| || | || || || | | | |||| ||| | Sbjct 2182 TAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGC 2123 Query 165959 TATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGAT 166018 | |||| | ||||||| || || || | |||| ||| | || || || || || || Sbjct 2122 TCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAAT 2063 Query 166019 TAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATGA 166078 | | || ||||| || ||||| | ||||| || ||||| || ||| | ||||| Sbjct 2062 CCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGA 2003 Query 166079 AGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGA 166138 ||| | | | | ||| |||| | ||| || ||| |||| ||| || | ||| |||| Sbjct 2002 AGGTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGA 1943 Query 166139 AGAAGT 166144 || || Sbjct 1942 GGAGGT 1937 >seq161624 Length=13970 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 164261 GGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATAC 164320 |||| ||||||||||||| | |||| | |||||| ||||||||| || ||||| Sbjct 9734 GGTCATGAGTGGGAACTTAGATTTTGTCTGGATATGCGCCCTTGGATTGTTGTTGCATAT 9793 Query 164321 TCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCT 164380 || ||| ||| | | | | || || ||| || || | | |||||||| Sbjct 9794 TCAACTCTTGTTGTAGTTACTACTGTTGTTTTCTTGATCAACCTAATCGGTCAATAAAAC 9853 Query 164381 TTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAG 164440 || ||| || |||||||| || | | || || ||||||| ||| | || |||||| Sbjct 9854 TTTTCTAATTGTATGCCTCTAGGACTTTTTGATACTTTCAACTTCATAATTGTATTCCAG 9913 Query 164441 GCTGAGCACAACATCCTCATGCACCCCTTCCA 164472 |||||| ||| |||||| |||||||| ||||| Sbjct 9914 GCTGAGTACATCATCCTTATGCACCCATTCCA 9945 >seq203261 Length=8816 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/143 (73%), Gaps = 8/143 (6%) Strand=Plus/Minus Query 164398 TCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCT 164457 ||| || || ||||| |||||||||| |||| | || ||| |||||||||||| Sbjct 1355 TCTAGGAATATCTGGTACCTTCAACTTCATGATTGTGTTC--------GCACAACATCCT 1304 Query 164458 CATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGC 164517 |||||| | ||||||||| | | | || | ||| || | |||||| || ||||||| Sbjct 1303 TATGCACTCATTCCATATGTTAGACATAATTGTTGTATTCGACGGTTCCCTATTCAGTGT 1244 Query 164518 AATGCACGGTTCGCTGGTTACTT 164540 ||||||||||| || | |||| Sbjct 1243 TATGCACGGTTCCTTGATAACTT 1221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556187462218080