Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq43099 118 1e-21 seq129087 98.7 1e-15 seq34924 91.5 2e-13 seq127763 86.0 7e-12 seq50242 86.0 7e-12 seq203261 82.4 9e-11 >seq43099 Length=3685 Score = 118 bits (130), Expect = 1e-21 Identities = 238/351 (68%), Gaps = 4/351 (1%) Strand=Plus/Minus Query 179482 CAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTG 179541 |||||||||| ||| || | || || || |||| || ||||| ||||| | | Sbjct 2285 CAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAACTTATTCAATGGTAATCG 2226 Query 179542 CCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATT 179601 | |||||||| | || | |||||| | | | || |||||| ||||| |||||| Sbjct 2225 CTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAATAAATGTTGGTTACATT 2166 Query 179602 TCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTC 179661 ||||| |||| || || || | | | | |||| | |||| | |||||| Sbjct 2165 TCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGCTCTTGGAGTAGTTGGTC 2106 Query 179662 TTGCACTTAACCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATC 179721 | || || ||| | | | ||| |||| ||||| ||||| ||| | | || |||| Sbjct 2105 TAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAATCCATGTAGTGGAAGATC 2046 Query 179722 CTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGA 179781 |||| || |||| ||||| ||||| || || || || ||||||||| | | | |||||| Sbjct 2045 CTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGAAGGTATTCATACTTGGA 1986 Query 179782 TGGCACCAGTC--GATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGT 179830 ||||| | || ||||| || |||||||| || |||| |||| || || Sbjct 1985 TGGCA--ATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGAGGAGGT 1937 >seq129087 Length=3483 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 179160 CTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACGTCTAGTCGGTATTCGTCCTTAC 179219 || |||||||||||| | || || || ||| | || || | || | || |||||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 179220 AATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCT 179279 ||||||||||| || |||| |||||||| ||| ||||| ||||| || || || ||||| Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 179280 CTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTC 179339 | || ||||| ||| ||| || ||| ||||| || | | | || || || ||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 179340 CTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATG 179393 | ||||| || || || | || |||| | ||||| || || ||| || Sbjct 425 ATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq34924 Length=1951 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 176172 TATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGT 176231 || || || ||| | ||||| | |||||| | ||||| ||||| ||| | ||||| Sbjct 741 TACATCCTTGATTCGGCTGAAAATGCAGGACTGGAACTGCCATACTCATGCAGGGCTGGA 800 Query 176232 GCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCG 176291 ||||| || | |||||||| | | | ||||| | || || ||| ||| ||| Sbjct 801 GCCTGCTCAACCTGTGCAGGGCAGATGGTGTCGGGATCTGTCGACCAATCAGATGGATCA 860 Query 176292 TTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACG 176351 |||||||| || | || || ||| |||| | | ||||| ||||||||||| || || Sbjct 861 TTCCTTGACGAGAAGCAAATGGATAATGGTTACGTGCTGACCTGTGTTTCATACCCAACA 920 Query 176352 AGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGA 176396 || ||||| ||| | ||| | || |||| ||| || || ||| Sbjct 921 TCAGACTGTGTAATTCATACTCACAAGGAAGGGGATCTCTACTGA 965 >seq127763 Length=4742 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 176187 GCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGT 176246 |||||||| ||||| ||||| || || || ||| | ||||| || || || | ||| Sbjct 1756 GCTGAGGATGCAGGTGTTGAGCTACCTTATTCTTGCAGGGCTGGGGCATGCTCTACCTGT 1815 Query 176247 GCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCGTTCCTTGATGATGAC 176306 ||||| || | | || || | || || || ||| ||| ||||||||||| | Sbjct 1816 GCAGGGCAAATGGTTTCAGGTTCAGTGGACCAGTCTGATGGATCCTTCCTTGATGACAAG 1875 Query 176307 CAGATCGATGCAGGTTTCATT-CTGACTTGTGTTTCATATCCTACGAGCGATTGTGTGAT 176365 ||||| || | ||| || || || ||||| ||||||| || || ||||||||||| Sbjct 1876 CAGATGGA-GAAGGGTTATTTGCTAACTTGCATTTCATACCCAACTTCAGATTGTGTGAT 1934 Query 176366 TGAGACTGAGAAAGAAGAGGAACTTTATTGA 176396 | | ||| | || ||| || ||||||||| Sbjct 1935 TCACACTCACAAGGAAAGTGATCTTTATTGA 1965 >seq50242 Length=1831 Score = 86.0 bits (94), Expect = 7e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 176172 TATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGT 176231 || || || ||| | ||||| | || ||| | ||||| ||||| ||| | ||||| Sbjct 685 TACATCCTTGATTCGGCTGAAAATGCGGGACTGGAACTGCCATACTCATGCAGGGCTGGA 744 Query 176232 GCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCG 176291 ||||| || | |||||||| | | | ||||| | || |||||| ||| ||| Sbjct 745 GCCTGCTCAACCTGTGCAGGGCAGATGGTGTCGGGATCTGTCGATCAATCAGATGGATCA 804 Query 176292 TTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACG 176351 |||||||| || | || || ||| |||| | | ||||| ||||||||||| || || Sbjct 805 TTCCTTGACGAGAAGCAAATGGATAATGGTTACGTGCTGACCTGTGTTTCATACCCAACT 864 Query 176352 AGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGA 176396 || | ||| ||| | ||| | || |||| ||| || || ||| Sbjct 865 TCAGACTCTGTAATTCATACTCACAAGGAAGGGGATCTCTACTGA 909 >seq203261 Length=8816 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/131 (73%), Gaps = 8/131 (6%) Strand=Plus/Minus Query 178080 TGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 178139 ||| |||||||||| |||| |||| ||| |||||||||||| |||||| | || Sbjct 1343 TGGTACCTTCAACTTCATGATTGTGTTC--------GCACAACATCCTTATGCACTCATT 1292 Query 178140 CCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTC 178199 ||| ||||| | | | || ||| || | ||||| || ||||||| ||||||||||| Sbjct 1291 CCATATGTTAGACATAATTGTTGTATTCGACGGTTCCCTATTCAGTGTTATGCACGGTTC 1232 Query 178200 TCTGGTTACTT 178210 || | |||| Sbjct 1231 CTTGATAACTT 1221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594738584095040