Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq43099 123 3e-23 seq129087 107 2e-18 seq161624 89.7 6e-13 seq159223 86.0 7e-12 >seq43099 Length=3685 Score = 123 bits (136), Expect = 3e-23 Identities = 263/390 (67%), Gaps = 2/390 (1%) Strand=Plus/Minus Query 171221 TGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGAC 171280 ||||||||||||| ||||| || ||| ||| ||| | | ||| | | || || Sbjct 2302 TGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAAC 2243 Query 171281 ATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAA 171340 ||||| ||||| | ||||| ||||| | || | || ||| | | | || ||| Sbjct 2242 TTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAA 2183 Query 171341 TAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAG 171400 ||| ||||||| ||||||||| || | || || || | | | | ||| | ||| Sbjct 2182 TAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGC 2123 Query 171401 TCTGGGGATTATTGGTCTTGCTCTTAATCTTA-GGGCTTATGATTTCGTAAGTCAGGAGG 171459 ||| || | ||||||| |||| ||| |||| | | ||| | ||||| || || Sbjct 2122 TCTTGGAGTAGTTGGTCTAGCTC-TAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAA 2064 Query 171460 TCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATG 171519 || | || |||||||| || || |||| ||||| ||||| || || || || |||| Sbjct 2063 TCCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATG 2004 Query 171520 AAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAG 171579 ||||| ||| | | ||||||||| ||| || || |||||||| || | ||| | | Sbjct 2003 AAGGTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTG 1944 Query 171580 AGGAAGTTCTACCTCGTGGCAATGCACTTT 171609 |||| ||| |||| | ||| || | |||| Sbjct 1943 AGGAGGTTATACCCCATGGAAAGACTCTTT 1914 >seq129087 Length=3483 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 170916 CTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCGTCTCGTAGGGATTAGACCGTAC 170975 || |||||||||||| | || || || ||| | ||| | || | |||| ||| Sbjct 245 CTAATAGGTTTCATGTTACGTCAATTCGAACTTGCTCGATTTGTTCAATTGCGACCTTAC 304 Query 170976 AATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCT 171035 ||||||||||| ||||||| ||| || | ||| ||||| || ||||| || ||||| Sbjct 305 AATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTAATTTATCCA 364 Query 171036 CTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTC 171095 | || ||||| ||||| ||| | ||| ||||| || | | | || || || ||| Sbjct 365 TTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATATTTCGATTC 424 Query 171096 CTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATG 171149 ||||||| ||||| || | || ||||| |||| |||||||||||| || Sbjct 425 ATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATGTTG 478 >seq161624 Length=13970 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 169685 GGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTAC 169744 |||| |||||||||| | | | |||||| ||||||||||||||| |||||| || Sbjct 9734 GGTCATGAGTGGGAACTTAGATTTTGTCTGGATATGCGCCCTTGGATTGTTGTTGCATAT 9793 Query 169745 TCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCG 169804 || ||| |||| | | | | ||||||| || || ||| | || ||| Sbjct 9794 TCAACTCTTGTTGTAGTTACTACTGTTGTTTTCTTGATCAACCTAATCGGTCAATAAAAC 9853 Query 169805 TTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAA 169864 || ||| | ||||||||| || | | | || || |||| ||| | || ||||| Sbjct 9854 TTTTCTAATTGTATGCCTCTAGGACTTTTTGATACTTTCAACTTCATAATTGTATTCCAG 9913 Query 169865 GCTGAGCACAACATCCTCATGCACCCCTTCCACA 169898 |||||| ||| |||||| |||||||| ||||||| Sbjct 9914 GCTGAGTACATCATCCTTATGCACCCATTCCACA 9947 >seq159223 Length=5599 Score = 86.0 bits (94), Expect = 7e-12 Identities = 200/301 (66%), Gaps = 8/301 (3%) Strand=Plus/Minus Query 171135 CCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCAT 171194 ||||||||||||||||| |||| | | || ||| | |||| | | |||||| Sbjct 3443 CCATTTCATATGATGGGAGTTGTCAATGTACTAGGCACTAATTTGCCGTACTCTATTCAT 3384 Query 171195 GGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAA-------CACCTT 171247 |||| || |||||| |||| |||| ||||||||||||| ||||| | ||| Sbjct 3383 GGTGCTATAGTAGAAAATAAGTTGTTTGAAGATGGTGATGGTGCAAATTCATTCTAGCTT 3324 Query 171248 TAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTT 171307 | | ||| | | ||||| ||||| || ||||| || || ||| ||||| Sbjct 3323 TTAAATTTTTAATCCAACTCATAGTGAAGAAACTTATTCAATAGTTTTCATTAACCGTTT 3264 Query 171308 CTGGTCGCAGATTTTTGGTATCGCGTTCAGCAAT-AAGCGTTGGTTGCATTTCTTTATGC 171366 |||| || || || | || || || |||| || |||||||| |||| |||||| Sbjct 3263 TTGGTTCCAAATCTTCAGGATTGCTTTTTCCAATAAATCGTTGGTTATATTTTTTTATGT 3204 Query 171367 TGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTA 171426 ||||||| || | | | | | ||| | ||| ||| ||| | ||| ||| |||| | Sbjct 3203 TGTTTGTACCAGCAACCGATTTATGGATGAGTGCTCTTGGGGTAGTTGATCTATCTCTAA 3144 Query 171427 A 171427 | Sbjct 3143 A 3143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590640592498880