Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07]
1,907 sequences; 486,196,837 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq42 104 5e-17
seq37 104 5e-17
seq1 104 5e-17
seq51 100 6e-16
seq43 100 6e-16
seq753 98.7 2e-15
seq23 98.7 2e-15
>seq42
Length=30274277
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 25028328 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 25028269
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 25028268 CCCACGGTGGGC 25028257
Score = 104 bits (114), Expect = 5e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-ATGAACGCTGAACT 230468
|||| |||||| | || ||||| | || || ||| || ||| |||||| || ||
Sbjct 25646867 GAAAGAGAGTTCGTCTGCGACGCGTTGCCGTG-CGCTCTAGTGGGGATGAACAGTGCTCT 25646809
Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528
||| | || |||||||||||||| ||||| ||| | | | || | ||||||| |||
Sbjct 25646808 AATGAGCCAATACATCGAATTCGTTGCCGATCGCCTGCTCGGCGCCTTGGGTTACGGGAA 25646749
Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588
|||||||| | ||| || || | | |||||||| || || | || || |||||
Sbjct 25646748 GATGTACAACGTTTCGAATCCGTTCGACTGGATGGAGCTAATCTCTTTACAGGGAAAGAC 25646689
Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
|||||||||||| ||| | || | || ||||||| | || ||||||
Sbjct 25646688 CAACTTCTTCGAGAAGAGGGTTGGGGAGTATCAGAAGGCTTCAGTGATG 25646640
Score = 104 bits (114), Expect = 5e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766
||||||||||||||||||| |||||||||| || || |||| || |||||||||||||||
Sbjct 26018190 CTTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 26018249
Query 165767 AGCCCCACGATGGGC 165781
||||||||| |||||
Sbjct 26018250 AGCCCCACGGTGGGC 26018264
>seq37
Length=24396255
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 2872099 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2872040
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 2872039 CCCACGGTGGGC 2872028
>seq1
Length=23037639
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 19924170 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19924111
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 19924110 CCCACGGTGGGC 19924099
>seq51
Length=29360087
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||||||||||||| ||||||||||| || || |||| || |||||||||||||||||
Sbjct 4321937 TGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4321996
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 4321997 CCCCACGGTGGGC 4322009
>seq43
Length=20304914
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| |||||||||| || || |||| || |||||||||||||||||
Sbjct 15092028 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15092087
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 15092088 CCCCACGGTGGGC 15092100
>seq753
Length=2240
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||| ||||||||||| || || |||| || ||||||||||||||||||
Sbjct 1458 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1399
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1398 CCCACGGTGGGC 1387
>seq23
Length=22385789
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 9272701 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9272642
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 9272641 CCCACGGTGGGC 9272630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057798153723410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |