Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq42 104 5e-17 seq37 104 5e-17 seq1 104 5e-17 seq51 100 6e-16 seq43 100 6e-16 seq753 98.7 2e-15 seq23 98.7 2e-15 >seq42 Length=30274277 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 25028328 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 25028269 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 25028268 CCCACGGTGGGC 25028257 Score = 104 bits (114), Expect = 5e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-ATGAACGCTGAACT 230468 |||| |||||| | || ||||| | || || ||| || ||| |||||| || || Sbjct 25646867 GAAAGAGAGTTCGTCTGCGACGCGTTGCCGTG-CGCTCTAGTGGGGATGAACAGTGCTCT 25646809 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | || |||||||||||||| ||||| ||| | | | || | ||||||| ||| Sbjct 25646808 AATGAGCCAATACATCGAATTCGTTGCCGATCGCCTGCTCGGCGCCTTGGGTTACGGGAA 25646749 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| | ||| || || | | |||||||| || || | || || ||||| Sbjct 25646748 GATGTACAACGTTTCGAATCCGTTCGACTGGATGGAGCTAATCTCTTTACAGGGAAAGAC 25646689 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||||| ||| | || | || ||||||| | || |||||| Sbjct 25646688 CAACTTCTTCGAGAAGAGGGTTGGGGAGTATCAGAAGGCTTCAGTGATG 25646640 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 ||||||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 26018190 CTTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 26018249 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 26018250 AGCCCCACGGTGGGC 26018264 >seq37 Length=24396255 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2872099 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2872040 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2872039 CCCACGGTGGGC 2872028 >seq1 Length=23037639 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 19924170 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19924111 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 19924110 CCCACGGTGGGC 19924099 >seq51 Length=29360087 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||| ||||||||||| || || |||| || ||||||||||||||||| Sbjct 4321937 TGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4321996 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 4321997 CCCCACGGTGGGC 4322009 >seq43 Length=20304914 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 15092028 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15092087 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 15092088 CCCCACGGTGGGC 15092100 >seq753 Length=2240 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||| ||||||||||| || || |||| || |||||||||||||||||| Sbjct 1458 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1399 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1398 CCCACGGTGGGC 1387 >seq23 Length=22385789 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 9272701 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9272642 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9272641 CCCACGGTGGGC 9272630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057798153723410