Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq42 134 1e-26 >seq42 Length=30274277 Score = 134 bits (148), Expect = 1e-26 Identities = 306/458 (67%), Gaps = 3/458 (1%) Strand=Plus/Plus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || ||||| ||||| ||||| |||||||||| ||| | || || || || || || Sbjct 25646944 CACGCGAAGTCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAAT 25647003 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || ||||| || |||||||||| ||| ||||||| | ||| || || ||||| Sbjct 25647004 CCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAG 25647063 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 || || || ||| | || || |||| | |||||||| | || || || ||| Sbjct 25647064 ATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT--CGA 25647121 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 ||||| | |||||| |||||| | | || || || || || || || | | Sbjct 25647122 -TCCATCGGAGAGCCCACTGGGCTTTCTTCGCTACACAGGGGATGGTATCGATTGCGTGA 25647180 Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 || | | | ||| |||| | | || | ||||||| || | | || |||||||| Sbjct 25647181 AAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGTACATC 25647240 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATT 17323 |||||||| ||||| || ||||| ||||||||||| || ||| || || || || | Sbjct 25647241 TCGGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGCGACC 25647300 Query 17324 TGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 || || ||| ||| | | | || || |||||| ||||| ||||| |||||| Sbjct 25647301 TGGACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAGCGGCG 25647360 Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC 17421 || || || | ||||| | ||||| | || ||||| Sbjct 25647361 AAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTC 25647398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517533263006760