Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq42 127 2e-24 >seq42 Length=30274277 Score = 127 bits (140), Expect = 2e-24 Identities = 386/585 (66%), Gaps = 15/585 (3%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 |||||||||||||| |||| || ||||||| ||| | || || || |||||||| Sbjct 25646944 CACGCGAAGTCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAAT 25647003 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA-AAGAA 16320 || ||||| || |||||||||| ||||||||||| |||| | | ||| | ||||| Sbjct 25647004 CCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCG-AGCAGAAGCTTCCGGAGAAGAA 25647062 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC--ATCTTTATTA 16378 || || || || | || || |||| | ||||| || | || | | | | Sbjct 25647063 GATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT---- 25647118 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 ||| ||||| | |||| | |||||| | || ||| || || || || || Sbjct 25647119 CGA-TCCATCGGAGAGCCCACTGGGCTTTCTTCGCTACACAGGGGATGGTATCGATTGCG 25647177 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 | ||| | | | ||| |||| ||| | ||||||| || | || | ||||||| Sbjct 25647178 TGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGTAC 25647237 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558 || || ||||| ||||| || ||||| |||||||||||||||||| |||||||| || Sbjct 25647238 ATCTCGGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGCG 25647297 Query 16559 ATTTGTACTTCC-ACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTTG 16616 | || || ||| | | || | |||| || ||||| || ||||| |||||| | Sbjct 25647298 ACCTGGACCTCCTTCATGAA--CCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAG 25647355 Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCC 16676 | || || || || | || || | ||||| | || ||||| || || | | || Sbjct 25647356 CGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGGTTTTCCC 25647415 Query 16677 AATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 | | || | || | || ||||| || | |||||||| ||| | |||| Sbjct 25647416 ATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCTGTCCAAAACGACGCCTCGGCCT 25647475 Query 16737 TTTTATACATTTTCCAAATATCATTGTATTGTAT-GGGAA-ATAC 16779 | || ||||||| ||| | ||| ||| || || ||||| |||| Sbjct 25647476 TCTTGTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATAC 25647520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511402209159240