Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq42 181 1e-40 seq12 98.7 1e-15 >seq42 Length=30274277 Score = 181 bits (200), Expect = 1e-40 Identities = 399/590 (68%), Gaps = 20/590 (3%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || ||||| |||||||||| |||||||||| ||||| || || || || || Sbjct 25646940 CAAGCACGCGAAGTCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGT 25646999 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 24249 | ||| ||||| || || || || || ||||| ||||| || ||| | | | || || | Sbjct 25647000 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGA-GCAGAAGCTTCCGGAGA 25647058 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGT 24306 |||| || ||||| || || || || | || | ||| || | ||| || || Sbjct 25647059 AGAAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT 25647118 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | ||||| ||||||| | ||| ||||| |||||| || || || || || | Sbjct 25647119 CG---ATCCATCGGAGAGCCCACTGGGCTTTCTTCGCTACACAGGGGATGGTATCGATTG 25647175 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | | |||||| |||||| || || ||| || | ||| | || | ||| ||||| | Sbjct 25647176 CGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 25647235 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || || || |||||||||||||| || |||||||| ||||| | |||||||| Sbjct 25647236 ACATCTCGGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGG 25647295 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 | ||| || || | || | | | || | ||||| || ||||||||| | Sbjct 25647296 CGACCTGGACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAG 25647355 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGTTTATT 24604 | || || || || | | ||| | || || | || |||| |||||| || || || Sbjct 25647356 CGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTG--AGGTT-TT 25647412 Query 24605 CCAATCATTGA----TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 24660 || |||||| || | ||| | || ||||| || |||||||||| || |||| Sbjct 25647413 CC---CATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCTGTCCAAAACGACGCCT 25647469 Query 24661 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 | ||||| || ||||| | ||||| ||| | || ||||| || || ||| Sbjct 25647470 CGGCCTTCTTGTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATA 25647519 >seq12 Length=21026613 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | || || ||||| || || ||||| | ||| | || || | Sbjct 18118193 GTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 18118252 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || || | |||||| || || || || | ||| |||||||| || | || | ||| || Sbjct 18118253 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 18118311 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| ||||| || | ||| | || ||||| | |||||| | || | Sbjct 18118312 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAGGACCTCTCAAG 18118371 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| |||||||| || | || |||||| || || ||||| || Sbjct 18118372 GGTTTTGAAACCAAAGTAATCATAATCAAAGTCCCGGTCATAAATGAT 18118419 Score = 82.4 bits (90), Expect = 9e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | || |||| ||| | || | | ||| |||| ||| || Sbjct 18117777 TCCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCC 18117836 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||||| ||||| || || ||||| ||||| |||||||||| ||| || || Sbjct 18117837 ATTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGA 18117896 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || || ||| | || || |||| || ||||| || Sbjct 18117897 AACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATAT 18117956 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 || || ||||||||||| ||||| || || || |||||| Sbjct 18117957 TCCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 18117999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593707447161360