Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq1562 419 7e-113 >seq1562 Length=7100 Score = 419 bits (464), Expect = 7e-113 Identities = 1087/1629 (67%), Gaps = 36/1629 (2%) Strand=Plus/Minus Query 22536 GGTAATCCGGCGGTATTCATGCAGCGGTTCACGATATTACGGTCGATGCCCTCTGCTTCA 22595 || ||| |||||| || || |||||| | | || ||||| || || || ||| Sbjct 5880 GGCAATTTGGCGGTGTTGATACAGCGGGTAATAATCTTACGTGAAATATTTTCCGCATCA 5821 Query 22596 GCCAGGGCTTTAACGTTACCATCAAATTCTTTCAG---TCGGC--GCAAGTACCGTTTCC 22650 ||||| || || || ||| ||||||| ||| | ||||| ||| || || | | Sbjct 5820 GCCAGCGCAGAAATATTTCCAGCAAATTCATTCTGCAATCGGCTTGCA--TAACGCTGAC 5763 Query 22651 CGCGTTCGTATGCACTGGTTGGCCGATAGTCGTTACCCAA-CTGTGACAACTGCTGC-AT 22708 | ||||| || ||||| ||||| ||||| ||||||||||| ||| || || ||| || || Sbjct 5762 CACGTTCATAAGCACTTGTTGGGCGATAATCGTTACCCAATCTG-GATAA-TGCAGCCAT 5705 Query 22709 TTGTTCATCATCCAGCTCTCCAACGAGAACCCGATAATCGCTACCAGTGATGATGGCTGT 22768 || |||||||||||||| ||||| ||||| |||||||| || | || | || | Sbjct 5704 CTGCTCATCATCCAGCTCGCCAACCAGAACACGATAATCACTTTCGGTAAGTGCAGCAGC 5645 Query 22769 TTTGCGGCGGCGTGAGCCATCGGCAATTTCGATAATGCCTGACGTCCTTCTGGCGAACGC 22828 ||| || ||||| |||||||||||||| || | || || |||| ||||||| Sbjct 5644 TTTACGACGGCGACTCCCATCGGCAATTTCTATGACACCAGATACTCTTCGACCGAACGC 5585 Query 22829 GGGGTTCTGCTGTCCTGA-AGTGAGGAATGAAGGGATAAGGTCGGCCAGCGCTGATTCGT 22887 || |||| || || | ||| || || |||||||| || || |||| || || Sbjct 5584 CGGTGTCTGTTGACCAGTCAGT-AGAAAAGAAGGGATGAGATCATCCAGTGCGTCCTCAG 5526 Query 22888 TCAGCAATTCCTGATCACGTTCATTACCGAGCCAAACCATTGTGGCCTTTTCGACTTTAT 22947 | |||| ||||| |||||||||||||| ||| ||| | || ||| || || ||| Sbjct 5525 TAAGCAGCTCCTGGTCACGTTCATTACCTGACCATACCCGAGAGGTCTTCTCAACACTAT 5466 Query 22948 CAGCAGGAATGGTTTCCAGCTTAAAAGTCACGTTGCGGCCGCAAACCGGTAGCGTAATGC 23007 || | | | ||| || |||| |||| | || || || || || | |||||| Sbjct 5465 CACCCCGGAGCACTTCAAGAGTAAACTTCACATCCCGACCACATACAGGCAAAGTAATGG 5406 Query 23008 TATTCCCGGACAACGAACTTAATTTGCTCTGTAAGTCGC-CAACCATCGGCGAAACCGAT 23066 ||| ||| ||| | || ||| || | ||| ||| | || ||| Sbjct 5405 CATTACCG-----CGAGCCA---TTACTCC-TACG-CGCGCAATTAACGAATCCACCATC 5356 Query 23067 GGCGCTTTTTGCGGCGCATTATGGTTATTGCTCATGAACGTTTCGATGTTGGGCGCATTT 23126 || || | | | || || | | | ||| | || || | ||| ||| || | Sbjct 5355 GGGGCAGCTGGTGTCG-ATAACGAAGTATCTTCA--ACCGGTTGAGTATTGAGCGTATGT 5299 Query 23127 TTT--AATATAGAGCG-ATTCTTCATAGT-TAGTCCTCCCAACGAGGTTTGATTAGATCT 23182 ||| |||| ||| | |||||| | || || ||||| || ||||| || ||| Sbjct 5298 TTTGGAATAACAGGCGCACGCTTCATTATCTAATC-TCCCAGCGTGGTTTAATCAGACGA 5240 Query 23183 TCGAAAATTTCTTTGCAGACTGGCTCCCAGATTTCCACTGCATTTCGCCAGGCATTAAGC 23242 ||||||||||| |||||||| || ||||| || | ||||||| ||||||| | Sbjct 5239 TCGAAAATTTCATTGCAGACAGGTTCCCAAATAGAAAGAGCATTTCTCCAGGCACCAGTT 5180 Query 23243 GTTGAGCGTTGATTTGCTGCTTGCTCAAATACGGTGCGCATCTTGATCTGGCCTTTACCA 23302 | |||||||||| || || ||||| || || | |||| |||||| ||||||||| Sbjct 5179 GAAGAGCGTTGATCAATGGCCTGTTCAAAAACAGTTCTCATCCGGATCTGACCTTTACCA 5120 Query 23303 ACTTCATCAGTGACCCGCACGACCTGTCGCAAGACCATAGCTCCCCAGGTATTTCGAATC 23362 |||||||| || | || || || | | | ||||| |||||||| || ||||| Sbjct 5119 ACTTCATCCGTTTCACGTACAACATTTTTTAGAACCATGCTTCCCCAGGCATCCCGAATT 5060 Query 23363 TGCTCCTCCATCCACCGGGACTGATTGCCGTTAGTAAGGCTGTATTTGGTCAGGAGCAGG 23422 ||||||||||||||| |||||||| ||| || || |||||||||||| || | | Sbjct 5059 TGCTCCTCCATCCACGGGGACTGAGAGCCATTGCTATTGCTGTATTTGGTAAGCAAAATA 5000 Query 23423 CGGACGACAGGTTCAAAGCCGCCCAAATCGACGGTTTCAAGCAGGTCGAGCAGCATGGTG 23482 || || |||| || || || | ||| ||| | | ||||| || | ||||| | Sbjct 4999 CGTACATCAGGCTCGAACCCTTTAAGATCAACGTTCTTGAGCAGATCACGAAGCATATCG 4940 Query 23483 AAAAACTGAAGAACTGATGCATAGTCGAACAGCTCTGCAGGGGTTGCTACCACGATGACG 23542 |||||||| || | || | ||||| |||| ||| ||||| || | || | | || Sbjct 4939 AAAAACTGCAGTGCGGAGGTGTAGTCAAACAACTCAGCAGGCGTGGGAACAATCAGCACA 4880 Query 23543 TCAGCAGCACAGACAACGTTAATAGTTCCCGTACCCAAGTTTGGCGCGCTGTCTATGACG 23602 ||||||||||| || || ||||| || || |||||| ||| ||||||||||| || || Sbjct 4879 TCAGCAGCACATACGACATTAATCGTGCCGATACCCAGGTTAGGCGCGCTGTCAATAACT 4820 Query 23603 ATAATGTCGTAGTTATCCCATACAGACTCGATAGCAGCACGAAGCATCAGATGAGG-GGG 23661 || | || |||| || |||| || || || || |||||||| || || | Sbjct 4819 ATGACATCATAGTCATGAGCAACAGTTTCAATGGCCAGTCGGAGCATCAGGTGTGGATCG 4760 Query 23662 ATGAGGTAGCTTCCCCTCGGAATGGTACTGCATCAGATCTGTTTCAATGCGGTGAAGGGC 23721 || || || || || || | | ||| | || |||||||| ||||| || || Sbjct 4759 GTG-GGCAGTTTACCTTCATCAAATTTGCCCATTAACTCAGTTTCAATACGGTGCAGAGC 4701 Query 23722 CAGGCAGCTGGGGATTATGTCGAGACCCGGCCAGCATGTTGGTTTTATCGCATATTCAGC 23781 ||| ||| || || ||||| || ||||||||||| || || ||||| ||||| | Sbjct 4700 CAGACAGGAAGGAATAATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGCATAAGTGAC 4641 Query 23782 GTTGTCGCGTTTACCC-AGGTAAAATGGAAGCAGTGTATCGTCTGCGTGAATGTGCAAAT 23840 | ||| | ||| ||| || || || || || || || || ||||| ||||| || | || Sbjct 4640 ATCGTC-CTTTTCCCCAAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAATATGAAGAT 4582 Query 23841 CAGGAACGTAACCGTGGTACATAGATGCAGTCCCTTGCGGGTCGTTCCCTTCAACGAGTA 23900 | || || | ||||| ||||| || || || || || |||||||| ||||| ||||| | Sbjct 4581 CTGGTACCCATCCGTGATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCA 4522 Query 23901 GGACGCGGTGCCCTTGCAAGGCTAACCATTGCGCCTGGTGTACTGCAGATGAGGTTTTAT 23960 || || |||| | || || | || || | || || | | ||||||||| | Sbjct 4521 AAACACGTAGCCCCTTCAGAGCCAGATCCTGAGCAAGATGAACAGAAACTGAGGTTTTGT 4462 Query 23961 AAACCCCTCCCTTGTGTGACATAACGGAAAGTACAACCGGGTTTTTATCGTCAGGTCTTT 24020 |||| || || || || | ||| | || || | || |||| | | Sbjct 4461 AAACGCCACCTTTATGGGCAGCAACCCCGATCACCGGTGGAAATACGTCTTCAGCACGTC 4402 Query 24021 GGTTTGGGTTACCAAACACACTCCGCATATGGCTAATTTGGTCAATTGTGTAGCCAGCGC 24080 | | | ||||||||||| |||||||| ||||||| |||||||| || ||| | | Sbjct 4401 GCAATCGCGTACCAAACACATCACGCATATGATTAATTTGTTCAATTGTATAACCAACAC 4342 Query 24081 GACGTTCTACTCGGCCCCTCATCTCAAAATCAGGAGCCGGTAGACGACCAGCTTTTTCCG 24140 | | || || || || | || || | ||| || |||||| || || ||||| || | Sbjct 4341 GTTGCTCAACCCGTCCTCGAATATCCATATCCGGGTGCGGTAGTCGCCCTGCTTTCTCGG 4282 Query 24141 CGTCTCTGA 24149 | ||||||| Sbjct 4281 CATCTCTGA 4273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148275042142958