Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq42 132 7e-26 seq57 89.7 8e-13 seq51 86.0 9e-12 >seq42 Length=30274277 Score = 132 bits (146), Expect = 7e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | |||||||| || || || || || || | || |||| ||| Sbjct 11327637 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGC-T 11327579 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| ||| |||| |||||| ||||| || ||||| || || ||||||| Sbjct 11327578 CTGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATC 11327519 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||| | |||||||| ||||| || | |||||| | | || || | ||||||| Sbjct 11327518 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATA 11327459 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| ||||| || || | || |||| | ||||| ||||||| || Sbjct 11327458 ACATTCAGAAAGAGTCCACACTCCACCTGGTCCTCCGTTTGAGAGGTGGAAT 11327407 Score = 132 bits (146), Expect = 7e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | |||||||| || || || || || || | || |||| ||| Sbjct 11519604 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGC-T 11519662 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| ||| |||| |||||| ||||| || ||||| || || ||||||| Sbjct 11519663 CTGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATC 11519722 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||| | |||||||| ||||| || | |||||| | | || || | ||||||| Sbjct 11519723 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATA 11519782 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| ||||| || || | || |||| | ||||| ||||||| || Sbjct 11519783 ACATTCAGAAAGAGTCCACACTCCACCTGGTCCTCCGTTTGAGAGGTGGAAT 11519834 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || ||||| |||||| | || |||| | Sbjct 11335206 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACCATAACTCTTGAAGTTGAGAGTTCT 11335147 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||| ||||| || || ||||| || ||||| || Sbjct 11335146 GATACCATTGACAATGTTAAGGCA-AAAATCCAAGACAAGGAGGGTATCCCCCCTGACCA 11335088 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| ||||| || | |||||| || | || || | |||||||| Sbjct 11335087 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGTAGGACTTTGGCCGATTATAA 11335028 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || || | || | || | ||||| |||| || || Sbjct 11335027 CATTCAAAAAGAGTCCACCCTACACCTTGTACTTCGTTTGAGAGGAGGAAT 11334977 Score = 109 bits (120), Expect = 8e-19 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || || || || || || || | || |||| || | Sbjct 11481623 ATGCAAATTTTTGTGAAGACCCTTACTGGTAAGACCATTACCCTTGAAGTTGAGAGTTCA 11481682 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | ||| |||||| || || || || || || || || || || Sbjct 11481683 -GACACCATCGATAATGTTAAAGCGAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCA 11481741 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| ||||||||||| || || | |||||| | || ||||| | |||||||| Sbjct 11481742 GCAGAGGCTCATTTTTGCAGGTAAGCAGCTTGAGGATGGCCGGACATTGGCTGATTATAA 11481801 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || ||||| || || | || |||||| | ||||| ||||||| || ||| || Sbjct 11481802 CATCCAGAAAGAGTCCACACTTCACTTGGTTCTCCGTTTGAGAGGTGGCATGCAAATTT 11481860 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| || || || |||||||| || | || |||| || | Sbjct 11334294 ATGCAAATATTTGTGAAGACCCTTACTGGTAAAACTATCACCCTTGAAGTTGAGAGTTCA 11334235 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | ||| ||||| || || || |||||||| ||||| || || Sbjct 11334234 -GACACTATCGACAATGTGAAAGCAAAAATCCAGGACAAGGAAGGTATTCCACCCGACCA 11334176 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || |||| ||| ||||||| || | || || || Sbjct 11334175 GCAGAGGCTAATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGAACTTTGGCTGACTACAA 11334116 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || |||||||| | || | ||| | || |||| || ||||| Sbjct 11334115 TATACAGAAGGAATCAACCCTTCACCTTGTTCTCCGCCTACGTGGGGGTAT 11334065 Score = 102 bits (112), Expect = 1e-16 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | || |||||||| || || || || || | || |||| || Sbjct 11334979 AATGCAAATATTTGTCAAAACACTAACTGGAAAGACCATCACACTTGAAGTTGAGAGTTC 11334920 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | ||||||||| || | || || || || || || || ||||| || || || | Sbjct 11334919 A-GATACAATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACC 11334861 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||| ||||| || || || | |||||| | || ||||| | ||||||| Sbjct 11334860 AGCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTGATTATA 11334801 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | || || || || || || | || |||||| | ||| | ||||||| || ||| || Sbjct 11334800 ACATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGTCTGAGAGGTGGCATGCAAATTT 11334741 Score = 100 bits (110), Expect = 4e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| ||||||| || || || || || || ||| | ||| | || ||| Sbjct 11520060 AATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAGGTGGAGAGC-T 11520118 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| ||||| ||| | || ||| || ||||| || || ||||| || || |||| Sbjct 11520119 CTGACACAATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAGGGTATCCCCCCAGATC 11520178 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||| || ||||| | |||||| | | || | | ||||| | Sbjct 11520179 AGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACA 11520238 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| ||||| || | || ||||| | || | || || ||||| Sbjct 11520239 ACATACAAAAGGAATCCACCCTTCACCTGGTTCTTCGCCTTCGTGGAGGTAT 11520290 Score = 96.9 bits (106), Expect = 5e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| ||||||| || || || || || || ||| | || | || ||| Sbjct 11327181 AATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAAGTGGAGAGC-T 11327123 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||||||| ||| | || || || ||||| || || ||||| || || |||| Sbjct 11327122 CTGATACAATCGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCCCCAGATC 11327063 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||| || ||||| | |||||| | | || | | ||||| | Sbjct 11327062 AGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACA 11327003 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 | |||||||| ||||| || | || ||||| Sbjct 11327002 ACATTCAAAAGGAATCCACCCTTCACCTGGTT 11326971 Score = 84.2 bits (92), Expect = 3e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | || || || || | || || || || | || |||| || Sbjct 11481394 AATGCAAATATTTGTCAAAACGCTTACTAGAAAGACAATCACACTTGAAGTTGAGAGTTC 11481453 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | ||||||| | ||| | || || || || || || || ||||| || || || | Sbjct 11481454 A-GATACAACTGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACC 11481512 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||| ||||| || || || | |||||| | || ||||| | |||| | Sbjct 11481513 AGCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTCATTACA 11481572 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||| || || || || || | ||||||||| | ||| | | ||||| || ||| || Sbjct 11481573 ATATCCAGAAGGAGTCCACCCTTCATTTGGTTCTCCGTCTGAGGGGTGGCATGCAAATTT 11481632 >seq57 Length=24021853 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| |||| || || || || || || || || | ||| | || ||| Sbjct 5916562 ATGCAGATTTTTGTAAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTCGAGAGCTCC 5916621 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | ||| ||| || || ||||| || || || ||||| || || Sbjct 5916622 -GACACCATTGACAACGTGAAAGCGAAGATCCAGGATAAGGAGGGCATTCCACCAGACCA 5916680 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| ||||| || ||||| || | || || | ||||| | | ||||| || Sbjct 5916681 GCAGAGGCTGATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTCGCCGATTACAA 5916740 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| |||||| |||| ||||| | ||| | || || || || Sbjct 5916741 CATTCAAAAAGAGTCAACTCTGCACTTGGTGCTCCGTCTTCGTGGAGGGAT 5916791 >seq51 Length=29360087 Score = 86.0 bits (94), Expect = 9e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 205449 ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACC 205508 ||| |||||||| | ||||||||| |||| ||||| |||||||| ||||| | ||| Sbjct 11026727 ATGAGCAATCATGCATGTCAATAAAGCATAAGAAGCAATGTTAAATGGCACACCAAGACC 11026786 Query 205509 CATATCAGCTGATCTTTGATACATTTGACA 205538 ||||||||| || | |||||||||||||| Sbjct 11026787 CATATCAGCAGAGCGCTGATACATTTGACA 11026816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755437991817600