Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq57 100 4e-16 seq42 95.1 2e-14 >seq57 Length=24021853 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || || | || | || || ||||| || ||||||||| Sbjct 22348727 GTTCCTCCCCTGAGCCTCAAAACAAGGTGAAGTGTGGACTCTTTTTGGATGTTATAATCT 22348668 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | | ||| || | |||||| ||||||||||||||||| |||||||| ||| Sbjct 22348667 GCAAGAGTGCGACCATCTTCCAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGA 22348608 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 22348607 GGAATGCCTTCCTTGTCCTG 22348588 >seq42 Length=30274277 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/230 (67%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | | | |||| || | || || ||||| || |||||||| | Sbjct 11327408 TTCCACCTCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCGG 11327467 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| |||| ||| || | || ||||||||||||||||| ||||||||||| || | Sbjct 11327468 CCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGGG 11327527 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | |||||||| || ||||| ||||| || || || | Sbjct 11327528 GGATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATCGTATCAGAGCTCTCAA 11327587 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| || ||||| || || || || | ||| |||| |||||||||||| Sbjct 11327588 CTTCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACAAATATTTGCATT 11327637 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/230 (67%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | | | |||| || | || || ||||| || |||||||| | Sbjct 11519833 TTCCACCTCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCGG 11519774 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| |||| ||| || | || ||||||||||||||||| ||||||||||| || | Sbjct 11519773 CCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGGG 11519714 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | |||||||| || ||||| ||||| || || || | Sbjct 11519713 GGATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATCGTATCAGAGCTCTCAA 11519654 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| || ||||| || || || || | ||| |||| |||||||||||| Sbjct 11519653 CTTCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACAAATATTTGCATT 11519604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743508676189440