Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq57 123 2e-23 seq23 109 4e-19 seq49 104 2e-17 seq12 100 2e-16 seq42 84.2 1e-11 >seq57 Length=24021853 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||||| ||| | || |||||||| ||||||||||| | Sbjct 5891588 TCCTCCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAGTCAGC 5891529 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || |||| |||||| || ||||| || |||| ||||||||| || Sbjct 5891528 GAGGGTTCGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCCGGTGG 5891469 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | | || | |||| |||||| Sbjct 5891468 AATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCGAC 5891409 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||| |||||||| || |||||||| ||||||||||| ||||||||| ||| Sbjct 5891408 CTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCATCCCTC 5891356 Score = 116 bits (128), Expect = 2e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| ||||| || ||||||||||||| || ||| | || Sbjct 5916545 AGCACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCT 5916486 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || ||||| || |||| ||||||||| || | || |||||| || Sbjct 5916485 TCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGAATGCCCTCCTTATCC 5916426 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| |||||| |||| |||||||| Sbjct 5916425 TGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCCAGGGTGATGGTC 5916366 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || ||||| || ||||||||||| ||||||||| ||| Sbjct 5916365 TTCCCGGTAAGGGTTTTCACAAAAATCTGCATCCCTC 5916329 Score = 111 bits (122), Expect = 1e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||| ||| | ||| || ||||| |||||||| || | Sbjct 5917016 CCACCGCGCAGACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 5916957 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||||||| |||||||| || | ||||||||| || Sbjct 5916956 AGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGA 5916897 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||||| | | | | || | |||| |||||| Sbjct 5916896 ATCCCTTCCTTGTCCTGAATCTTC-GCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGAC 5916838 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||| |||||||| || |||||||| ||||||||||| ||||||||| ||| Sbjct 5916837 CTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCATCCCTC 5916785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| | ||| || || || ||||| ||||||||||||| | Sbjct 5891131 CCACCGCGGAGACGAAGCACTAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 5891072 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||| || || ||||| || |||| |||||| || || Sbjct 5891071 AGTGTTCGACCGTCTTCAAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGATCCGGTGGG 5891012 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| ||||| ||||| ||| | || | |||| |||| || || Sbjct 5891011 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCGGAGCTCTCAACC 5890952 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || ||||| || ||||| || ||||| ||||||||||||||| Sbjct 5890951 TCTAGGGTTATGGTCTTTCCGGTAAGTGTTTTAACAAAGATCTGCATC 5890904 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| | ||| || || || ||||| ||||||||||||| | Sbjct 5916104 CCACCGCGGAGACGAAGCACTAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 5916045 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| || ||||| || |||| |||||| || || Sbjct 5916044 AGAGTTCGACCGTCTTCAAGCTGCTTCCCGGCGAATATTAGCCTCTGCTGATCCGGTGGG 5915985 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| ||||| ||||| ||| | || | |||| || | || || Sbjct 5915984 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCCGAGCTCTCAACC 5915925 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || || || || ||||| |||||||| ||||||||||||||| Sbjct 5915924 TCTAGGGTTATCGTCTTTCCGGTAAGAGTTTTGACAAAGATCTGCATC 5915877 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| |||||||| || ||||| |||| || || | || Sbjct 5916317 AGGACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCGGCAAGGGTTCGCCCATCT 5916258 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || |||| ||||||||| || | | ||||||||| Sbjct 5916257 TCGAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCC 5916198 Query 34298 GCTATCTTTTGCTTTAGA-TCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| |||||| | | | |||| || | |||||| |||| || ||||| Sbjct 5916197 TGGATCTTG-GCTTTAACGTTGTCGATCGTGTCTGAGCTTTCGACTTCCAAAGTAATGGT 5916139 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || |||||||||||||| ||||||||| Sbjct 5916138 CTTTCCTGTAAGAGTTTTCACAAATATCTGCATC 5916105 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | ||| | | || |||| |||||| || ||||| Sbjct 5917208 TCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAAG 5917149 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || |||| |||||| || || | | ||||||||| ||| |||||||| | || Sbjct 5917148 ATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATC-TTTGCTTTGACATT 5917090 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| || || |||| ||||||||| || || || || || ||||| Sbjct 5917089 GTCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTCAC 5917030 Query 34378 AAAGATCTGCAT 34389 ||||| ||||| Sbjct 5917029 GAAGATTTGCAT 5917018 >seq23 Length=22385789 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| ||||||||||||| || ||| |||| Sbjct 4579872 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCC 4579813 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || ||||| ||||| ||||||||||| || | || |||||||| Sbjct 4579812 TCCAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 4579753 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| || | | || | || | |||||| || || | || ||||| Sbjct 4579752 TGGATCTTAGCCTTGGCATTGTCGATGGTGTCAGACGATTCAACCTCTAAGGTTATGGTC 4579693 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 4579692 TTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 4579660 >seq49 Length=17126926 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| || |||||||||| || ||| |||| Sbjct 13269919 AGCACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCGTCC 13269860 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTC 34296 |||| ||| ||||| ||||| ||||| |||||||||| || |||| | || |||||||| Sbjct 13269859 TCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGG-ATGCCTTCCTTGTC 13269801 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | |||| || | ||||| || || | || ||||| Sbjct 13269800 TTGGATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATGGT 13269741 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || || ||||| || ||||||||| Sbjct 13269740 CTTCCCCGTTAGGGTCTTCACGAAAATCTGCATC 13269707 >seq12 Length=21026613 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | ||| || ||||| ||||||||||| | || ||| |||| Sbjct 4557218 AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTCCGGCCGTCC 4557159 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| || |||||||| || | || |||||||| Sbjct 4557158 TCGAGCTGCTTCCCGGCGAATATGAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 4557099 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | || || || || | || ||||| Sbjct 4557098 TGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTTATGGTC 4557039 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 4557038 TTACCCGTTAGGGTTTTCACGAAGATCTGCATC 4557006 >seq42 Length=30274277 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||| || | || || | || || | ||| || || || || Sbjct 11520023 TCTTTCTGAATGTTGTAATCTGCCAAGGTCCGACCATCCTCAAGCTGTTTACCAGCAAAG 11519964 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||||| ||||||||| ||| | | ||||||||| || ||| ||||| || | Sbjct 11519963 ATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTG 11519904 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | || || || | ||||||||||| || ||||| || || ||| Sbjct 11519903 TCAATCGTGTCAGAACTCTCTACTTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACA 11519844 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 11519843 AAGATTTGCAT 11519833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323064491301920