Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq42 100 2e-16 seq57 89.7 4e-13 >seq42 Length=30274277 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| |||| |||||| || ||||| |||||||||||||| || ||| Sbjct 11326954 CCTCCACGAAGGCGAAGAACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGCC 11327013 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | ||| || | ||||| || ||| |||| || || || ||||| ||| Sbjct 11327014 AGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGG 11327073 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | | ||| || | | | || ||| | ||| | Sbjct 11327074 ATACCCTCCTTGTCTTGGATCTTTGCCTTCACATTGTCGATTGTATCAGAGCTCTCCACT 11327133 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| |||||| | || ||||||| || |||||||| ||||||||| Sbjct 11327134 TCAAGAGTGATGGTCTTCCCGGTCAGCGTCTTTACAAATATTTGCATT 11327181 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| || | ||| || || |||||||| || ||||||||||| ||| Sbjct 11333840 CCTCCACGAAGGCGAAGAACAAGGTGCAGCGTGGATTCTTTCTGTATGTTGTAGTCAGCC 11333899 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | ||||| || ||| |||| || || ||||| || || Sbjct 11333900 AAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGA 11333959 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || |||| | |||||| | ||| ||||| | ||| | Sbjct 11333960 ATGCCTTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACT 11334019 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| |||| || || || || || |||||||| ||||| Sbjct 11334020 TCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 11334066 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| |||||||| || || ||||||||||| |||| ||| || |||| Sbjct 11482290 AGAACAAGGTGAAGGGTTGATTCCTTCTGTATGTTGTAGTCAGCCAAAGTTCGACCATCT 11482231 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || ||| |||| || || || || || || | |||||||| || Sbjct 11482230 TCTAGCTGCTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGTGGAATACCTTCCTTGTCC 11482171 Query 18234 GCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| |||||| || | ||| |||||| ||| ||||| |||||| | Sbjct 11482170 TGAATTT-TTGCTTTCACATTATCAATAGTGTCTGAACTCTCTACTTCAAGGGTGATAGT 11482112 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || || | || || |||||||||||||| Sbjct 11482111 TTTACCAGTAAGGGTCTTCACAAAAATTTGCAT 11482079 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||| || || ||||| ||||||||||| || |||| || || ||| Sbjct 11520044 AGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCCAAGGTCCGACCATCC 11519985 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || ||| |||| || || || || || ||| | || ||||| || Sbjct 11519984 TCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCT 11519925 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| | ||| || | ||| |||||| ||| ||||| ||||||| || Sbjct 11519924 TGGATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCTACTTCAAGGGTGATGGTT 11519865 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || || | ||| || ||||| ||||||||| Sbjct 11519864 TTTCCAGTGAGTGTCTTAACAAAGATTTGCATT 11519832 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||| || || ||||| ||||||||||| || |||| || || ||| Sbjct 11327197 AGAACCAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCCAAGGTCCGACCATCC 11327256 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || ||| |||| || || || || || ||| | || ||||| || Sbjct 11327257 TCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCT 11327316 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | ||| |||||| ||| ||||| ||||||| || Sbjct 11327317 TGGATTTTCGCCTTTACATTGTCAATTGTGTCAGAACTCTCTACTTCAAGGGTGATGGTT 11327376 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || || | ||| || ||||| ||||||||| Sbjct 11327377 TTTCCAGTGAGTGTCTTAACAAAGATTTGCATT 11327409 >seq57 Length=24021853 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || |||| ||| || ||||| ||||||||||||||||||||||| Sbjct 5916560 CCTCCACGAAGACGGAGCACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCG 5916501 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||| || || || || |||| || || || || || || Sbjct 5916500 AGGGTTCGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGA 5916441 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| || | ||| || | ||| ||||| | ||| Sbjct 5916440 ATGCCCTCCTTATCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCGACC 5916381 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || ||||| | ||||| |||||||| ||||| Sbjct 5916380 TCCAGGGTGATGGTCTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 5916334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || |||| ||| || ||||| ||||||||||||||||| ||||| Sbjct 5916788 CCTCCACGAAGACGGAGCACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAATCGGCG 5916729 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||||| || || || || | || || || || || || || Sbjct 5916728 AGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGGA 5916669 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| |||||||| || | | || || || | ||| ||||| | |||| Sbjct 5916668 ATGCCCTCCTTATCCTGGATCT-TCGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCGAC 5916610 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || ||||| | |||||||||||||| ||||| Sbjct 5916609 CTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTTACAAAAATCTGCAT 5916562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379335183452715