Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq42 187 3e-42 seq12 89.7 6e-13 >seq42 Length=30274277 Score = 187 bits (206), Expect = 3e-42 Identities = 416/616 (68%), Gaps = 20/616 (3%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || ||||| |||||||| | |||||||||| ||||| || || || || || Sbjct 25646940 CAAGCACGCGAAGTCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGT 25646999 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | ||| ||||| || || || || || ||||| ||||| || ||| |||||| || Sbjct 25647000 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAA 25647059 Query 33698 GAAGATTCCTTCTACTGCAG-CAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGT 33753 |||||| ||||| || |||| | || || | || | || || | ||| || || Sbjct 25647060 GAAGATGCCTTCCAC-GCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT 25647118 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | ||||| ||||||| | ||| ||||| |||||| || || || || || | Sbjct 25647119 CG---ATCCATCGGAGAGCCCACTGGGCTTTCTTCGCTACACAGGGGATGGTATCGATTG 25647175 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | | |||||| |||||| || || ||| || | ||| | || | ||| ||||| | Sbjct 25647176 CGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 25647235 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33933 |||| || || || |||||||||||||| ||||||||||| ||||| | |||||||| Sbjct 25647236 ACATCTCGGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGG 25647295 Query 33934 TAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGG 33993 | ||| || || | || | | | || | ||||| || ||||| ||| | Sbjct 25647296 CGACCTGGACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAG 25647355 Query 33994 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGTTTATT 34051 | || || || || | | ||| | || || | || |||| |||||| || || || Sbjct 25647356 CGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTG--AGGTT-TT 25647412 Query 34052 CCAATCATTGA----TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 || |||||| || | ||| | || ||||| || |||||||||| || |||| Sbjct 25647413 CC---CATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCTGTCCAAAACGACGCCT 25647469 Query 34108 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 34167 | ||||| || ||||| | ||||| ||| | || || || ||||| ||| || | || Sbjct 25647470 CGGCCTTCTTGTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATACAGAACCGAT 25647529 Query 34168 TTGGATTTGGTGCAAG 34183 ||| || || || || Sbjct 25647530 CTGGGTTAGGAGCGAG 25647545 >seq12 Length=21026613 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | || || ||||| || || ||||| | ||| | || || | Sbjct 18118193 GTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 18118252 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||||| || || || || | ||| |||||||| || | || | ||| || Sbjct 18118253 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 18118311 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| ||||| |||| || | || |||| | |||||| | || | Sbjct 18118312 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAGGACCTCTCAAG 18118371 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| |||||||| || | || |||||| || || ||||| || Sbjct 18118372 GGTTTTGAAACCAAAGTAATCATAATCAAAGTCCCGGTCATAAATGAT 18118419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802586722960