Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq42 167 3e-36 seq12 89.7 7e-13 >seq42 Length=30274277 Score = 167 bits (184), Expect = 3e-36 Identities = 396/590 (67%), Gaps = 20/590 (3%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || ||||| |||||||||| |||||||||| ||||| || || || || || Sbjct 25646940 CAAGCACGCGAAGTCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGT 25646999 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 36272 | ||| ||||| || || || || || ||||| ||||| || ||| | | | || || | Sbjct 25647000 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGA-GCAGAAGCTTCCGGAGA 25647058 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGT 36329 |||| || ||||| || || || || | || | || || | ||| | || Sbjct 25647059 AGAAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT 25647118 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 | ||||| ||||||| | ||| ||||| |||||| || || || || || | Sbjct 25647119 CG---ATCCATCGGAGAGCCCACTGGGCTTTCTTCGCTACACAGGGGATGGTATCGATTG 25647175 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | | |||||| |||||| || || ||| || | ||| | || | ||| ||||| | Sbjct 25647176 CGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 25647235 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 |||| || || || |||||||||||||| || |||||||| ||||| | |||||||| Sbjct 25647236 ACATCTCGGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGG 25647295 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | ||| || || | || | | | || | ||||| || ||||||||| | Sbjct 25647296 CGACCTGGACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAG 25647355 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGTGTTAGTTTATT 36627 | || || || || | | ||| | || || | || |||| ||||| || || || Sbjct 25647356 CGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTG--AGGTT-TT 25647412 Query 36628 CCAATCATTGA----TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 || |||||| || | ||| | || ||||| || |||||||||| || |||| Sbjct 25647413 CC---CATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCTGTCCAAAACGACGCCT 25647469 Query 36684 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 | ||||| || ||||| | ||||| ||| | || ||||| || || ||| Sbjct 25647470 CGGCCTTCTTGTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATA 25647519 >seq12 Length=21026613 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| || | || || ||||| || || ||||| | ||| | || || | Sbjct 18118193 GTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 18118252 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || | ||||| || || || || | ||| |||||||| || | || | ||| || Sbjct 18118253 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 18118311 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| ||||| || | ||| | || |||| | |||||| | || | Sbjct 18118312 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAGGACCTCTCAAG 18118371 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||| |||||||| || | || |||||| || || ||||| || Sbjct 18118372 GGTTTTGAAACCAAAGTAATCATAATCAAAGTCCCGGTCATAAATGAT 18118419 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | || |||| ||| | || | | ||| |||| ||| || Sbjct 18117777 TCCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCC 18117836 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||||||||| ||||| || || ||||| ||||| | |||||||| ||| || || Sbjct 18117837 ATTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGA 18117896 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || || ||| | || || |||| || ||||| || Sbjct 18117897 AACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATAT 18117956 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 || || ||||||||||| ||||| || || || |||||| Sbjct 18117957 TCCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 18117999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658157110805880