Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq42 109 5e-19 seq57 89.7 5e-13 seq12 89.7 5e-13 >seq42 Length=30274277 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || || || ||||||||||| ||||| || || || || || Sbjct 11326971 AACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGCCAGAGTCCTTCCATCCTC 11327030 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||||||||| |||| || | |||||||| || || || || || ||||| Sbjct 11327031 AAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTG 11327090 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| ||| || | | || | ||| || | | |||||| |||| || | ||||| Sbjct 11327091 GATCTTTGCCTTCACATTGTCGATTGTATCAGAGCTCTCCACTTCAAGAGTGATGGTCTT 11327150 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| ||| ||||| ||||||||||| Sbjct 11327151 CCCGGTCAGCGTCTTTACAAATATTTGCAT 11327180 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || || || ||||| ||||| ||||| || || || || || Sbjct 11520270 AACCAGGTGAAGGGTGGATTCCTTTTGTATGTTGTAATCAGCCAGAGTCCTTCCATCCTC 11520211 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||||||||| |||| || | |||||||| || || || || || ||||| Sbjct 11520210 AAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTG 11520151 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | |||||| | | ||||||||||| || | ||||| Sbjct 11520150 GATCTTCGCCTTCACATTGTCGATTGTGTCAGAGCTCTCCACCTCAAGAGTGATGGTCTT 11520091 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| ||| ||||| ||||||||||| Sbjct 11520090 CCCGGTCAGCGTCTTTACAAATATTTGCAT 11520061 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||||| |||||| | ||| ||||||| || |||||||| || ||||||||||| Sbjct 11334523 GCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGC 11334582 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| | || |||||||| ||||||||| | || || | ||||| || || || Sbjct 11334583 CAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGG 11334642 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| |||||| ||| | | || | ||||| | | ||| || Sbjct 11334643 AATACCCTCCTTGTCCTGGATTTTCGCTTTGACATTATCAATGGTGTCTGAGCTCTCAAC 11334702 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || | || || || || |||||||| Sbjct 11334703 TTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11334750 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | || | ||| | || |||||||| ||||||||||||||| | Sbjct 11327410 CCACCTCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCGGCC 11327469 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || ||||| || |||||| | |||| | ||||||||| || || Sbjct 11327470 AAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGGGGG 11327529 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| |||| | || | || || | | ||| || Sbjct 11327530 ATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATCGTATCAGAGCTCTCAACT 11327589 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || || | || || || ||||||||||| Sbjct 11327590 TCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 11327636 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | || | ||| | || |||||||| ||||||||||||||| | Sbjct 11519831 CCACCTCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCGGCC 11519772 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || ||||| || |||||| | |||| | ||||||||| || || Sbjct 11519771 AAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGGGGG 11519712 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| |||| | || | || || | | ||| || Sbjct 11519711 ATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATCGTATCAGAGCTCTCAACT 11519652 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || || | || || || ||||||||||| Sbjct 11519651 TCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 11519605 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | ||| ||||||| || ||||| || || ||||||||||| Sbjct 11334751 GCCACCTCTCAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCAGC 11334810 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| | || || ||||| ||||||||| |||| || | ||||| || ||||| Sbjct 11334811 CAATGTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGAGG 11334870 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| ||| || | | || | ||| || | ||| || Sbjct 11334871 AATACCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCAATTGTATCTGAACTCTCAAC 11334930 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || || | ||||| || ||||||||||| Sbjct 11334931 TTCAAGTGTGATGGTCTTTCCAGTTAGTGTTTTGACAAATATTTGCAT 11334978 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| ||||| | ||| ||||||| || |||||||| || ||||||||||| Sbjct 11481850 GCCACCTCTCAAACGGAGAACCAAGTGAAGTGTGGACTCTTTCTGGATGTTATAATCAGC 11481791 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| | || || ||||| ||||| ||| | || || | ||||| || || || Sbjct 11481790 CAATGTCCGGCCATCCTCAAGCTGCTTACCTGCAAAAATGAGCCTCTGCTGGTCTGGGGG 11481731 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| |||||| ||| | | || | ||||| | ||| || Sbjct 11481730 AATGCCCTCCTTGTCCTGGATTTTCGCTTTAACATTATCGATGGTGTCTGAACTCTCAAC 11481671 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || || | || || || || |||||||| Sbjct 11481670 TTCAAGGGTAATGGTCTTACCAGTAAGGGTCTTCACAAAAATTTGCAT 11481623 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| ||||| | ||| ||||||| |||||||| || || ||||| || || Sbjct 11334295 GCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGC 11334354 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| | ||||| ||||||||||||||| | || || | ||||| || || || Sbjct 11334355 CAATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGG 11334414 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| |||||| ||| | | || | ||||| | ||| || Sbjct 11334415 AATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAAC 11334474 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || | || || || || |||||||| Sbjct 11334475 TTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11334522 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| ||||| | ||| ||||||| || || || || || ||||| |||||| Sbjct 11482078 GCCACCTCTCAAACGGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCGGC 11482019 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| | ||||||||||| ||||||||| | || || | ||||| || || || Sbjct 11482018 CAATGTCCGACCATCTTCGAGCTGCTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGG 11481959 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||||||| ||| | | || | ||||| | ||| || Sbjct 11481958 GATACCCTCCTTGTCCTGGATTTTTGCTTTAACGTTATCAATGGTGTCTGAACTCTCAAC 11481899 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || || || || | || || || || |||||||| Sbjct 11481898 TTCAAGTGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11481851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | || | ||| | || |||||||||||||||||||||||| | Sbjct 11334980 CCTCCTCTCAAACGAAGTACAAGGTGTAGGGTGGACTCTTTTTGAATGTTATAATCGGCC 11335039 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || |||||||| || |||||| | |||| | |||||| || || || Sbjct 11335040 AAAGTCCTACCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGG 11335099 Query 139658 ATGCCTTCTTTGTCGGTGATTTTT 139681 || || || ||||| ||||||| Sbjct 11335100 ATACCCTCCTTGTCTTGGATTTTT 11335123 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| || |||| || |||||||| |||||||| ||||| || || | || || Sbjct 11520042 AACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCCAAGGTCCGACCATCCTC 11519983 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||||||||| |||| || | ||||| || || || || || || ||||| Sbjct 11519982 AAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTG 11519923 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||||||| |||| | || | ||||| | ||| || |||| ||| | || || Sbjct 11519922 GATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCTACTTCAAGGGTGATGGTTTT 11519863 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || || || || |||||||| Sbjct 11519862 TCCAGTGAGTGTCTTAACAAAGATTTGCAT 11519833 >seq57 Length=24021853 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||||||||||||||| |||||| Sbjct 5916788 CCTCCACGAAGACGGAGCACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAATCGGCG 5916729 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| ||||| || || || | ||||| | ||||| || || || Sbjct 5916728 AGGGTTCGGCCGTCTTCCAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGGA 5916669 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || || || ||| || ||| | | || | ||||||| | ||| ||| Sbjct 5916668 ATGCCCTCCTTATCCTGGATCTTCGCTTTCACGTTGTCAATGGTGTCGGAGCTCTCGACC 5916609 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| ||||| | |||||||| || || ||||| Sbjct 5916608 TCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTTACAAAAATCTGCAT 5916562 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| || ||||||||||| ||||||||||| | |||| || Sbjct 22348710 CAAAACAAGGTGAAGTGTGGACTCTTTTTGGATGTTATAATCTGCAAGAGTGCGACCATC 22348651 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| || ||||| |||||| | |||| | |||||||| ||||| |||||||| ||||| Sbjct 22348650 TTCCAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCCTTGTC 22348591 >seq12 Length=21026613 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 |||||||| || || ||||| || || ||| | || | ||| |||||||| || || Sbjct 4557203 GTAGACTCCTTCTGGATGTTGTAGTCAGCT-AGGGTCCGGCCGTCCTCGAGCTGCTTCCC 4557145 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || | || || |||||||| || ||||| |||||||| ||||| ||| || || Sbjct 4557144 GGCGAATATGAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 4557085 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | || ||||||||||| ||| | ||||| || || | || Sbjct 4557084 CACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTTATGGTCTTACCCGTTAGGGT 4557025 Query 139747 TTTTACGAATATTTGCAT 139764 ||| ||||| || ||||| Sbjct 4557024 TTTCACGAAGATCTGCAT 4557007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496052175074400