Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq9 100 3e-16 seq11 95.1 1e-14 seq995 84.2 2e-11 >seq9 Length=25021643 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || |||||||| || |||||||||||||||||| |||||| || ||||| || || || Sbjct 4238617 CAAGCAAAATCGCAGTGAAGGCCCTCATCTCTAGAAATAAGCTCATTTGAGAAAGTCAAA 4238558 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGC 13757 |||||||||||||||| ||||| | |||||| || || Sbjct 4238557 CCTGGCATCAATCCTCTCTTTTTAAGCCAAAAAATGGC 4238520 >seq11 Length=21508407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| |||||||| || ||||||||||||| |||| |||||| || ||||| || || || Sbjct 8788944 ACAAGCAAAATCGCAGTGAAGGCCCTCATATCTAGAAATAAGCTCATTTGAGAAAGTCAA 8789003 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 ||||||||||||||| ||||| | |||||| || ||| Sbjct 8789004 ACCTGGCATCAATCCTTTCTTTTTAAGCCAAAAAATGGCA 8789043 >seq995 Length=54223 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/95 (80%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || |||||||| || |||||||||||||||||| |||||| || ||||| || || || Sbjct 33209 CAAGCAAAATCGCAGTGAAGGCCCTCATCTCTAGAAATAAGCTCATTTGAGAAAGTCAAA 33268 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754 |||||||| | ||||| ||||| |||||| || Sbjct 33269 CCTGGCATTAGTCCTCTCTTTTT---CCAAAAAAT 33300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478577391639480