Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq57 93.3 3e-14 >seq57 Length=24021853 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| | | |||||| |||| || |||||| || | |||||||| | Sbjct 5917016 CCACCGCGCAGACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 5916957 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | || |||||||| ||||||| || ||| || || | || Sbjct 5916956 AGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGA 5916897 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGA 43060 | ||||| || || |||| || | |||| || || ||| |||||| ||| | ||| Sbjct 5916896 ATCCCTTCCTTGTC-CTGAATCTTCGCTTTCACGTTGTCAATGGTGTCGG-AGCTTTCGA 5916839 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || |||||||| || |||||||||||||| ||||| Sbjct 5916838 CCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 5916790 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||||| |||| || ||| || || | |||||||| | Sbjct 5891815 CCACCACGCAGACGAAGCACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGCG 5891756 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| |||| || || || || ||||||| | ||| || || | || Sbjct 5891755 AGAGTTCGGCCGTCTTCCAGCTGCTTCCCCGCGAAAATCAGCCTCTGCTGGTCCGGTGGA 5891696 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGAC 43061 | || || || || |||| |||| || || ||| |||||| ||| | |||| Sbjct 5891695 ATGCCCTCCTTATCCTGGATCTTAGCTTTCACGTTGTCAATGGTGTCGG-AGCTTTCGAC 5891637 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || || || ||||||||||||||||| |||||||| |||||| Sbjct 5891636 CTCTAGAGTAATTGTCTTTCCGGTTAGAGTTTTAACAAAAATCTGCATT 5891588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381360736374606