Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq42 170 3e-37 >seq42 Length=30274277 Score = 170 bits (188), Expect = 3e-37 Identities = 410/614 (67%), Gaps = 16/614 (3%) Strand=Plus/Plus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 ||| || ||||| |||||||| | ||||| |||| ||||| || || || || || Sbjct 25646940 CAAGCACGCGAAGTCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGT 25646999 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAA 42179 | ||| ||||| || || || || || ||||| ||||| || ||| | | | || || | Sbjct 25647000 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGA-GCAGAAGCTTCCGGAGA 25647058 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGT 42236 ||||||| ||||| || || || || | || | || || | ||| | || Sbjct 25647059 AGAAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT 25647118 Query 42237 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 | ||||| ||||||| | ||| ||||| |||||| || || || || || | Sbjct 25647119 CG---ATCCATCGGAGAGCCCACTGGGCTTTCTTCGCTACACAGGGGATGGTATCGATTG 25647175 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | | |||||| |||||| || || ||| || | ||| | || | ||| ||||| | Sbjct 25647176 CGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 25647235 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 |||| || || || |||||||||||||| ||||||||||| ||||| | ||||||| Sbjct 25647236 ACATCTCGGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGG 25647295 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 ||||| || || | || | | | || | |||||| || ||||||||| | Sbjct 25647296 CGACCTGGACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAG 25647355 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCC 42536 | || || || || | | ||| | || || | || |||| || || | | | |||| Sbjct 25647356 CGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGT-CGCTGGTGAGGTTTTCC 25647414 Query 42537 AATCATTGA----TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 |||||| || | ||| | || ||||| || | |||||||| || || || Sbjct 25647415 ---CATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCTGTCCAAAACGACGCCTCG 25647471 Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTT 42652 ||||| || ||||| | ||||| ||| | || ||||| ||||| ||| || | || | Sbjct 25647472 GCCTTCTTGTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATACAGAACCGATCT 25647531 Query 42653 GGATTTGGTGCAAG 42666 || || || || || Sbjct 25647532 GGGTTAGGAGCGAG 25647545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671123201719320