Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq42 96.9 4e-15 >seq42 Length=30274277 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | ||| | |||| ||||||||||| ||||| ||||| || | Sbjct 11482533 CCTCCACGAAGGCGAAGAACAAGGTGAAGCGTAGATTCTTTCTGTATATTGTAGTCAGCC 11482474 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || || ||||| |||||| ||||||| | || || || ||||| Sbjct 11482473 AAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGA 11482414 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||||||| || | | || | ||||| | | || ||| Sbjct 11482413 ATGCCTTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACT 11482354 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | || || || || || || || || ||||| |||||| Sbjct 11482353 TCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAATATCTGCATA 11482306 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | ||| | |||| || ||||| ||||| ||||||||||| | Sbjct 11326954 CCTCCACGAAGGCGAAGAACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGCC 11327013 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || || |||||||||||| |||| || | |||||||| || || Sbjct 11327014 AGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGG 11327073 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || ||| || | | || | || || | | || ||| Sbjct 11327074 ATACCCTCCTTGTCTTGGATCTTTGCCTTCACATTGTCGATTGTATCAGAGCTCTCCACT 11327133 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| ||||||| || ||||| ||||||||||| Sbjct 11327134 TCAAGAGTGATGGTCTTCCCGGTCAGCGTCTTTACAAATATTTGCAT 11327180 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | ||| | |||| || ||||| ||||||||||||||||| | Sbjct 11520287 CCTCCACGAAGGCGAAGAACCAGGTGAAGGGTGGATTCCTTTTGTATGTTGTAATCAGCC 11520228 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || || |||||||||||| |||| || | |||||||| || || Sbjct 11520227 AGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGG 11520168 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || || || | | || | ||||| | | || || Sbjct 11520167 ATACCCTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATTGTGTCAGAGCTCTCCACC 11520108 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| ||||||| || ||||| ||||||||||| Sbjct 11520107 TCAAGAGTGATGGTCTTCCCGGTCAGCGTCTTTACAAATATTTGCAT 11520061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||| || | ||| | |||| || ||||| || ||||||||||| || | Sbjct 11482305 CCCCCACGTAAGCGGAGAACAAGGTGAAGGGTTGATTCCTTCTGTATGTTGTAGTCAGCC 11482246 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| ||||| || || ||||||||| |||| || | ||||| || || | Sbjct 11482245 AAAGT--TCGACCATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGTG 11482188 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| ||||| ||||||| ||| | | || | ||||| | |||| Sbjct 11482187 GAATACCTTCCTTGTCCTGAATTTTTGCTTTCACATTATCAATAGTGTCTGAACTCTCTA 11482128 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| || | || || || || | || || || || |||||||| Sbjct 11482127 CTTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTCACAAAAATTTGCAT 11482079 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| ||||||||||| || || |||| || || || ||||| ||| Sbjct 11333870 GTGGATTCTTTCTGTATGTTGTAGTCAGCCAAAGTGCGGCCATCCTCAAGCTGTTTTCCA 11333929 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | || || || ||||| |||||||| ||||| |||||| || Sbjct 11333930 GCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTTGCCTTG 11333989 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||||| ||| | || || || || || || Sbjct 11333990 ACATTGTCAATTGTGTCTGAGCTCTCAACTTCAAGAGTGATTGTTTTACCAGTTAAGGTC 11334049 Query 143168 TTTACGAATATTTGCATA 143185 || || || || |||||| Sbjct 11334050 TTCACAAAAATCTGCATA 11334067 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| ||||| | ||| || |||| || ||||| || || |||||||||||| Sbjct 11482078 GCCACCTCTCAAACGGAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCGGC 11482019 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||| | |||||||| || ||||||||| | || || | ||||| || || || Sbjct 11482018 CAATGTCCGACCATCTTCGAGCTGCTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGG 11481959 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| |||||| ||| | | || | ||||| | || || Sbjct 11481958 GATACCCTCCTTGTCCTGGATTTTTGCTTTAACGTTATCAATGGTGTCTGAACTCTCAAC 11481899 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | || || || || | || || || || |||||||| Sbjct 11481898 TTCAAGTGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 11481851 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| ||||||| || || ||||| || ||||||||||| || || | || || Sbjct 11520042 AACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCCAAGGTCCGACCATCCTC 11519983 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 || |||||||||||| |||| || | ||||| || || || || || || ||||| Sbjct 11519982 AAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTG 11519923 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| |||| | || | |||||| | |||||||||| || | || || Sbjct 11519922 GATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCTACTTCAAGGGTGATGGTTTT 11519863 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | ||| || || || |||||||| Sbjct 11519862 TCCAGTGAGTGTCTTAACAAAGATTTGCAT 11519833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507002314044240